Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq29839 141 9e-29 >seq29839 Length=13537 Score = 141 bits (156), Expect = 9e-29 Identities = 251/360 (70%), Gaps = 11/360 (3%) Strand=Plus/Minus Query 13869 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13928 ||||| ||||||||||||||||| || ||||||| ||| | |||||||| || ||| Sbjct 4856 AAACAAGCAAAATCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTT 4797 Query 13929 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCA-AATGACCCGGAAAA 13987 ||||| ||||| || || |||||||| ||||| || | || |||| || || || || Sbjct 4796 AATCCAGGCATTAACCCACGTTTTTTCAACCAGAA-AATGGAGCAGAAACTACCTGAGAA 4738 Query 13988 GAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTT 14047 ||| ||||||||||| |||||||| | | || || | ||||| || || Sbjct 4737 GAAAATTCCCTCAACACAGGCAAACGCCAAAATACGCTCGGCGAACGA-----TTCCGTG 4683 Query 14048 CGAT--ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATA 14105 | || ||||| ||| ||||| |||| || || || | | | | ||||||||| Sbjct 4682 CTATCAATCCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATA 4623 Query 14106 GCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTA 14165 ||| || || | |||||| || | | || || || || |||| || | || Sbjct 4622 GCACGGAACAACCGATTCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTG 4563 Query 14166 TACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATA-AAAGCATCTAGCTTC 14224 ||||| || || || ||||| || || || || || || ||||| ||||| ||||||||| Sbjct 4562 TACATCTCGGAATGGATGTTCTCGATGGCAATTTGGAATCCATAGAAAGC-TCTAGCTTC 4504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479486648843200