Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq29839 140 3e-28 >seq29839 Length=13537 Score = 140 bits (154), Expect = 3e-28 Identities = 247/357 (69%), Gaps = 5/357 (1%) Strand=Plus/Minus Query 13657 AAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTT 13716 ||||| ||||||||||||||||| || ||||||| ||| | |||||||| || ||| Sbjct 4856 AAACAAGCAAAATCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTT 4797 Query 13717 AATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGC-GAATGATCCGGAAAA 13775 ||||| ||||| || || |||||||| ||||| || || | ||| ||| || || || Sbjct 4796 AATCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATGG-AGCAGAAACTACCTGAGAA 4738 Query 13776 GAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTT 13835 ||| ||||||||||| |||||||| | | || || | ||||| || || | Sbjct 4737 GAAAATTCCCTCAACACAGGCAAACGCCAAAATACGCTCGGCGAACGA---TTCCGTGCT 4681 Query 13836 TGATATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGC 13895 ||||| ||| ||||| |||| || || || | | | | ||||| || || Sbjct 4680 ATCAATCCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGC 4621 Query 13896 ATTGAATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATA 13955 | ||| || | | |||||| || | | || || || || |||| || | || || Sbjct 4620 ACGGAACAACCGATTCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTGTA 4561 Query 13956 CATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTC 14012 ||| || || || ||||| || || || || || || ||||| ||| ||||||||| Sbjct 4560 CATCTCGGAATGGATGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTC 4504 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478348021974720