Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq3045 107 1e-18 seq18711 91.5 1e-13 >seq3045 Length=115554 Score = 107 bits (118), Expect = 1e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | || || | ||||| ||| |||||| || | |||||||| | Sbjct 11268 CCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCTGCA 11327 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || || | || ||||||||||| || ||||| || | || |||||| || | || Sbjct 11328 AGAGTTCGGCCATCTTCCAATTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGGGGA 11387 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || ||| | || || || ||| |||||| || ||| || Sbjct 11388 ATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACC 11447 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || | || || || |||||||| ||||||||||||||||||||||| Sbjct 11448 TCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAAATTTGCAT 11494 >seq18711 Length=80062 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || ||||| || | | ||| | || | |||| ||||||||| | |||||| |||| Sbjct 40604 CCACCACGAAGACGCAGCACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCGGCT 40545 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | ||| ||| | || || | || ||||| || || ||||| | || || || | || Sbjct 40544 AGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCGAAGATCAACCTTTGCTGGTCCGGGGGA 40485 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCT-CGAC 43061 | ||||||||| || ||| ||||||| || | | |||||| ||| | | || Sbjct 40484 ATACCTTCTTTGTCTTGAATCTTAGCTTTGACATTGTCGATTGTGTCTG-AGCTTTCAAC 40426 Query 43062 GTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 |||| || ||||| || || || || ||||| ||||||||||||||| Sbjct 40425 CTCTAGTGTAATAGTCTTCCCCGTAAGCGTTTTGACAAAAATTTGCATT 40377 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 |||||||| || | | |||||| |||| ||| |||||||| | ||| || |||| Sbjct 40832 CCTCCACGAAGACGCAGCACCAAGTGGAGAGTCGATTCCTTTTGAATATTATAGTCGGCT 40773 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | | || |||||||| || || || ||||| || | |||||| || | || Sbjct 40772 AGAGTCCTGCCATCCTCCAATTGCTTCCCAGCGAAAATTAACCTCTGTTGGTCTGGTGGG 40713 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||||| || ||| |||| || || | | || || | ||| || Sbjct 40712 ATCCCTTCTTTATCTTGTATCTTAGCTTTAACGTTGTCGATAGTATCTGAACTCTCAACT 40653 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATT 43110 || | || || ||||||||||||| || |||||||||||||||||| Sbjct 40652 TCCAAAGTAATTGTTTTTCCGGTTAAGGTCTTCACAAAAATTTGCATT 40605 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381182529630384