Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq21318 105 7e-18 seq18711 93.3 4e-14 seq22339 89.7 5e-13 >seq21318 Length=12341 Score = 105 bits (116), Expect = 7e-18 Identities = 151/210 (72%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTC 143034 || ||||| | || ||||| ||||| ||||||||||| ||| | || || ||||| Sbjct 4308 ACCAAATGGAGAGTTGATTCCTTTTGGATGTTGTAATCAGCT-AAAGTTCTGCCATCTTC 4366 Query 143035 GAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 143094 |||||||| || ||| ||||||| | ||||| || || || || || || ||||| Sbjct 4367 AAGTTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCCTTGTCTTG 4426 Query 143095 AATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTT 143154 ||| ||| || | | || | ||||| | | ||||||||| | ||| | ||||| Sbjct 4427 AATCTTTGCCTTCACATTGTCGATAGTGTCGGAGCTTTCTACTTCCAGAGTGATGGTCTT 4486 Query 143155 GCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| |||||||| || ||||| || ||||| Sbjct 4487 GCCCGTCAATGTCTTCACGAAAATCTGCAT 4516 >seq18711 Length=80062 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || |||||||| | || ||||| | || ||||||||||||||||| |||||| Sbjct 40148 CCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 40089 Query 143018 ATTGTGCTCGA--GTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAG 143075 | | | |||| || ||||| || || ||||| | || || | ||||| || |||| Sbjct 40088 A--GGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAG 40031 Query 143076 GTATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTA 143135 | || |||||||| || |||||| |||| | || | || || | ||| | Sbjct 40030 GAATTCCTTCTTTATCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAA 39971 Query 143136 CTTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 | |||| || | || |||||||| | ||||| ||||| |||||||| Sbjct 39970 CCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 >seq22339 Length=139203 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 ||||| || ||||| |||||||| ||| || || | || |||||||| || || Sbjct 90568 GTAGACTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCGAGTTGCTTTCCG 90627 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| |||||||||||||| || || || ||||||||||| || || ||| Sbjct 90628 GCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTT 90687 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || || | | || || |||| || | ||||||||||||| || Sbjct 90688 ACGTTGTCGATGGTATCAGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTC 90747 Query 143168 TTTACGAATATTTGCAT 143184 || ||||| |||||||| Sbjct 90748 TTGACGAAAATTTGCAT 90764 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || || || | ||||| || | |||| || || || || || ||||||||||| Sbjct 89854 CCACCACGAAGACGCAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCG 89913 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || || || || || || ||||||| | ||||| || ||||| Sbjct 89914 AGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGAGGG 89973 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 |||||||| ||||| |||||| ||||| | || | |||||| | | || || Sbjct 89974 ATGCCTTCCTTGTCCTGAATTTTAGCTTTTACATTATCGATCGTGTCAGAGCTCTCCACC 90033 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| |||||||| ||||| ||||| || ||||| Sbjct 90034 TCCAAGGTGATGGTCTTTCCGGTCAAGGTTTTCACGAAGATCTGCAT 90080 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506759321055360