Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq18711 116 3e-21 seq22339 102 6e-17 seq3045 98.7 7e-16 seq21318 96.9 3e-15 >seq18711 Length=80062 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| ||||| || |||||||||||||| |||||| || ||| | || || Sbjct 40130 ACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACCATCCTCG 40071 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || || |||||| | || | | || ||||| |||||||||||||| || | Sbjct 40070 AGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCCTGA 40011 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 |||||| ||||||| | || || ||||| | |||| || || | ||| || ||||| Sbjct 40010 ATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTTATTGTTTTG 39951 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || |||||||| || || |||||||| Sbjct 39950 CCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 100 bits (110), Expect = 2e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||| ||||| || ||||| || ||||| ||| ||| | | | ||||| | || Sbjct 40580 TGAAGAGTGGACTCCTTTTGAATATTGTAGTCGGCTAGTGTCCGTCCATCTTCGAGCTGC 40521 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTT- 15279 ||||| ||| | ||||| | ||| ||||| ||||| ||||||||||| ||| || Sbjct 40520 TTGCCTGCGAAGATCAACCTTTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGAATCTTA 40461 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 ||| || ||| | || || || || |||| || |||| ||||| || || || || Sbjct 40460 GCT-TTGACATTGTCGATTGTGTCTGAGCTTTCAACCTCTAGTGTAATAGTCTTCCCCGT 40402 Query 15340 CAGAGTTTTTACAAAAATTTGCAT 15363 || ||||| |||||||||||||| Sbjct 40401 AAGCGTTTTGACAAAAATTTGCAT 40378 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 |||||||| | || || || || || |||||||| || | | | | | ||||| Sbjct 40358 ACTAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCCGCCAAAGTCCGGCCATCTTCA 40299 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| |||||| | || | | || ||||| || || || ||||| || Sbjct 40298 AGTTGTTTACCAGCGAAGATTAGTCTCTGCTGGTCCGGGGGGATACCCTCTTTATCTTGG 40239 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || || ||| ||| | || ||||||||| |||| || |||||||| ||||||||| Sbjct 40238 ATCTTAGCCTTCACATTATCGATGGTATCGGAGCTTTCCACCTCTAAGGTGATGGTTTTA 40179 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || |||||||| Sbjct 40178 CCGGTGAGGGTTTTCACGAAGATTTGCAT 40150 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || || || || ||||| || || || ||| |||| | || | || || Sbjct 40814 ACCAAGTGGAGAGTCGATTCCTTTTGAATATTATAGTCGGCTAGAGTCCTGCCATCCTCC 40755 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 ||||| || |||||| | || || | |||||||| ||| || |||||||| || Sbjct 40754 AATTGCTTCCCAGCGAAAATTAACCTCTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGT 40695 Query 15275 ATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || || ||| || || | || || ||||| | | || || || || ||||| ||||| Sbjct 40694 ATCTTAGCT-TTAACGTTGTCGATAGTATCTGAACTCTCAACTTCCAAAGTAATTGTTTT 40636 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || | || || |||||||||||||| Sbjct 40635 TCCGGTTAAGGTCTTCACAAAAATTTGCAT 40606 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| || ||||| |||||||||||| | | | | || || || ||| Sbjct 41036 TGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAACTGT 40977 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || |||||| | ||||| | ||| |||||| || || || || ||||| ||||| Sbjct 40976 TTTCCAGCGAAAATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTA 40917 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| || | || || || || | || || || || || ||||| || ||||| Sbjct 40916 GCCTTCACGTTGTCAATAGTGTCTGAGCTCTCAACCTCCAATGTTATGGTCTTTCCTGTT 40857 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || |||||||| |||||||| Sbjct 40856 AAGGTCTTTACAAATATTTGCAT 40834 >seq22339 Length=139203 Score = 102 bits (112), Expect = 6e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || ||||| || || || || ||||||||||| || | | ||||||||||||| Sbjct 90334 TGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGACCGTCTTCTAATTGC 90393 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || || ||| | || | | ||||||||| ||||||||||| ||||| || ||| Sbjct 90394 TTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTT 90453 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| || | || |||||||| ||| || || | ||| ||||||||||| || Sbjct 90454 GC-CTTGACGTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCGGT 90512 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 ||| || || || ||||| |||||| Sbjct 90513 CAGGGTCTTAACGAAAATCTGCATA 90537 >seq3045 Length=115554 Score = 98.7 bits (108), Expect = 7e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || | ||| || || || || || || ||||||||||| ||| ||| | ||| Sbjct 11283 AAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGAGTTCGGCCATCT 11342 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || |||||||| ||||| | || | | |||||||| ||||| ||||| ||||| Sbjct 11343 TCCAATTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGGGGAATACCTTCCTTGTCT 11402 Query 15272 CAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTT 15331 ||| ||| ||| || | || || || || | || || || ||||| ||||| Sbjct 11403 TGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTC 11462 Query 15332 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || |||||||| |||||||||||||| Sbjct 11463 TTTCCGGTGAGAGTTTTCACAAAAATTTGCAT 11494 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 |||||||| || || || || ||||||||||| || | || | ||||||| ||| Sbjct 10836 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCTAGTTGC 10895 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | ||||| | || ||||| |||||||| || ||||| |||||| Sbjct 10896 TTTCCAGCAAAGATCAACCTCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATTTTT 10955 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || || ||||| | | || || || || || ||||| || || ||| Sbjct 10956 GCCTTCACATTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCCGTC 11015 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || ||||| Sbjct 11016 AGGGTCTTAACAAAGATCTGCAT 11038 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | | |||| || | ||||| || || ||||| || |||||||| ||| Sbjct 11950 TGCCACCACGAAGCCTTAGGACGAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGG 12009 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| ||| | || || | ||| ||||| ||| | ||||||||||| || || | Sbjct 12010 CAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAAACGTTGCTGATCCGGGG 12069 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | |||||||| || || || ||| ||| || | || ||||| || || | Sbjct 12070 GGATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGACTCCA 12129 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| ||||| || ||||| || ||||| || || |||||||| Sbjct 12130 CCTCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTAACGAAGATTTGCAT 12178 >seq21318 Length=12341 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || || ||||| ||||||||||| || | |||| | ||||| Sbjct 4308 ACCAAATGGAGAGTTGATTCCTTTTGGATGTTGTAATCAGCTAAAGTTCTGCCATCTTCA 4367 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | ||||||||| || | |||| | || ||||| ||| ||||| || ||||| | Sbjct 4368 AGTTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCCTTGTCTTGA 4427 Query 15275 AT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 || ||||| ||| ||| | || || || ||| ||||||| || | || ||||| || Sbjct 4428 ATCTTTGC-CTTCACATTGTCGATAGTGTCGGAGCTTTCTACTTCCAGAGTGATGGTCTT 4486 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || |||| || || || ||||| ||||| Sbjct 4487 GCCCGTCAATGTCTTCACGAAAATCTGCAT 4516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362001542953368