Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq21318 93.3 3e-14 seq18711 84.2 2e-11 >seq21318 Length=12341 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18813 TTCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCG 18872 |||| || ||||| | | ||||| |||||||| || ||||||||||| || ||||| | Sbjct 4744 TTCCACCACGCAATCGAAGCACCAAATGCAACGTCGATTCCTTTTGAATGTTATAATCTG 4803 Query 18873 CCATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGG 18932 | | || || |||| || ||||| ||||| ||| |||| | ||||| || || | Sbjct 4804 CTAGAGTCCTGCCGTCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGTG 4863 Query 18933 GCACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG 18992 | | |||||| || || || || ||| || | | | ||||| |||| Sbjct 4864 GAATGCCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCTGAGCTCTCCA 4923 Query 18993 TTTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | ||| || ||||| || || || ||||| |||||||| ||||| Sbjct 4924 CTTCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 4972 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| |||| ||||| ||||| || |||||||| || || | ||| ||||||| Sbjct 4992 ACCAAATGCAGGGTAGATTCCTTCTGGATATTGTAGTCAGCAAGAGTTCGACCGTCCTCA 5051 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| ||||| ||| |||| |||||||| ||||| || | ||||| ||||| Sbjct 5052 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGAGGGATACCCTCCTTGTCTTGG 5111 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTA 19012 ||||| || || | | | | ||||| | ||| || | ||||||||||| Sbjct 5112 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 5171 Query 19013 CCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || | || || ||||| |||||||| Sbjct 5172 CCAGTAAGGGTCTTCACAAATATTTGCAT 5200 >seq18711 Length=80062 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| || || ||||| ||||| ||||| ||||||| || | | || || || ||| Sbjct 40352 TGCAATGTTGATTCCTTCTGAATGTTGTAGTCCGCCAAAGTCCGGCCATCTTCAAGTTGT 40293 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 ||||| || | || ||||||||||| ||| ||| | |||||||| || || || Sbjct 40292 TTACCAGCGAAGATTAGTCTCTGCTGGTCCGGGGGGATACCCTCTTTATCTTGGATCTTA 40233 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 || || | ||| |||||| ||| || | ||| ||||||||||| || Sbjct 40232 GCCTTCACATTATCGATGGTATCGGAGCTTTCCACCTCTAAGGTGATGGTTTTACCGGTG 40173 Query 19019 AAAGTTTTGACAAAAATTTGCATT 19042 | ||||| || || ||||||||| Sbjct 40172 AGGGTTTTCACGAAGATTTGCATT 40149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414369442713712