Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq18711 107 1e-18 seq3045 86.0 4e-12 >seq18711 Length=80062 Score = 107 bits (118), Expect = 1e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTA-ATTGACGCTCATCGT 43970 |||||| || || || || |||||||||||||| ||| || | | || |||| | Sbjct 40815 CACCAAGTGGAGAGTCGATTCCTTTTGAATATTATAGTCGGCTAGAGTCCTGC-CATCCT 40757 Query 43971 CCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTG 44030 ||||||| || || || || || |||| || ||||| | || | |||||||||||| Sbjct 40756 CCAATTGCTTCCCAGCGAAAATTAACCTCTGTTGGTCTGGTGGGATCCCTTCTTTATCTT 40697 Query 44031 AAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTT 44090 || || ||| || | | | |||||||| ||| || || | |||||||||| Sbjct 40696 GTATCTTAGCTTTAACGTTGTCGATAGTATCTGAACTCTCAACTTCCAAAGTAATTGTTT 40637 Query 44091 TACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | |||||||| ||||||||||| |||||||| Sbjct 40636 TTCCGGTTAAGGTCTTCACAAAAATTTGCAT 40606 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || || ||| ||| |||||||| || |||||| ||| ||| |||| ||||| ||| Sbjct 41036 TGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAACTGT 40977 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 ||||| || || ||||||| ||||||||| |||| | ||| || || || ||||| Sbjct 40976 TTTCCAGCGAAAATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTA 40917 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 || || | ||| ||| |||| ||| || || | || || || || || ||| Sbjct 40916 GCCTTCACGTTGTCAATAGTGTCTGAGCTCTCAACCTCCAATGTTATGGTCTTTCCTGTT 40857 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 || ||||| |||||||||||||| Sbjct 40856 AAGGTCTTTACAAATATTTGCAT 40834 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||||||||| || |||||||| || ||||||||| | || |||| || Sbjct 40131 CACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACCATCCTC 40072 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | || ||||| || || || | || |||||||| |||| | ||||||||||| Sbjct 40071 GAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCCTG 40012 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 |||||| || || | ||| |||||| | || || || | || |||||||| Sbjct 40011 AATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTTATTGTTTT 39952 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||||| | ||| ||||| || |||||||| Sbjct 39951 GCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 43919 TGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGT 43978 || || ||| ||| ||||||||||| || ||| || | || |||| || | || Sbjct 40580 TGAAGAGTGGACTCCTTTTGAATATTGTAGTCGGCTAGTGTCCGTCCATCTTCGAGCTGC 40521 Query 43979 TTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTT 44038 || ||||| || ||||||| |||||||||| | || | ||||||||| ||| ||| || Sbjct 40520 TTGCCTGCGAAGATCAACCTTTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGAATCTTA 40461 Query 44039 TGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTT 44098 |||||| | | | || |||| || || || | ||||| || || || || Sbjct 40460 GCTTTGACATTGTCGATTGTGTCTGAGCTTTCAACCTCTAGTGTAATAGTCTTCCCCGTA 40401 Query 44099 AAAGTCTTCACAAATATTTGCAT 44121 | || || ||||| |||||||| Sbjct 40400 AGCGTTTTGACAAAAATTTGCAT 40378 >seq3045 Length=115554 Score = 86.0 bits (94), Expect = 4e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 43918 ATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTG 43977 ||| || ||| || || ||||| || |||||| | ||| |||| ||||| || Sbjct 11519 ATGAAGAGTGGATTCCTTCTGAATGTTGTAATCGGCAAGGGTTCGCCCATCTTCCAACTG 11578 Query 43978 TTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTT 44037 ||||| ||||||||||| | |||||||| | || | |||||| ||||| || || Sbjct 11579 CTTTCCGGCAAATATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGATCTT 11638 Query 44038 TTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGT 44097 || || || ||| ||| || | || |||||| || | || || || || ||||| Sbjct 11639 GGCCTTCACGTTATCAATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTTCCGGT 11698 Query 44098 TAAAGTCTTCACAAATATTTGCATG 44122 | ||||| || || ||||||||| Sbjct 11699 AAGGGTCTTGACGAAGATTTGCATG 11723 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354603573604704