Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_005137.2 Length=131160 Score E Sequences producing significant alignments: (Bits) Value seq18711 107 2e-18 seq21318 102 7e-17 seq3045 96.9 3e-15 >seq18711 Length=80062 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 19980 TTCCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGC 20039 |||| || ||||| | | |||||||||||| || ||||||||||||||||| |||||| Sbjct 40150 TTCCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGG 40091 Query 20040 CCATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGG 20099 | | ||| | ||| || | || || || || ||||||||||||| || || | Sbjct 40090 CGAGGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAG 40031 Query 20100 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCG 20159 | | |||||||| || |||||| || || | | ||| || ||| | ||| Sbjct 40030 GAATTCCTTCTTTATCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAA 39971 Query 20160 TTTCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || | ||| || ||||||||||| | ||||| || || |||||||| Sbjct 39970 CCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 19982 CCTCCTCGTAACCTCAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCC 20041 ||||| || | | || |||||| || || || ||||| ||||| || || || ||| | Sbjct 40832 CCTCCACGAAGACGCAGCACCAAGTGGAGAGTCGATTCCTTTTGAATATTATAGTCGGCT 40773 Query 20042 ATAGTTTTAGAATCTTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGC 20101 | ||| | ||| |||||||| || || || |||| | ||||||||| || || Sbjct 40772 AGAGTCCTGCCATCCTCCAATTGCTTCCCAGCGAAAATTAACCTCTGTTGGTCTGGTGGG 40713 Query 20102 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTT 20161 | |||||||| || || || ||| || | | | | || ||| | || | Sbjct 40712 ATCCCTTCTTTATCTTGTATCTTAGCTTTAACGTTGTCGATAGTATCTGAACTCTCAACT 40653 Query 20162 TCCACGGTAATGGTTTTGCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 |||| ||||| ||||| ||||| || || || ||||||||||||||| Sbjct 40652 TCCAAAGTAATTGTTTTTCCGGTTAAGGTCTTCACAAAAATTTGCATT 40605 >seq21318 Length=12341 Score = 102 bits (112), Expect = 7e-17 Identities = 149/211 (71%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 19999 CACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATCTTC 20058 ||||||||| || || ||||| ||||| ||||||||||| | | |||| | |||||| Sbjct 4307 CACCAAATGGAGAGTTGATTCCTTTTGGATGTTGTAATCAGCTAAAGTTCTGCCATCTTC 4366 Query 20059 CAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTCGGC 20118 | ||||||||| ||| | || |||||||| || || || | || || ||||| Sbjct 4367 AAGTTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGGATTCCCTCCTTGTCTTG 4426 Query 20119 AATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGTTTT 20178 ||| ||| ||||| | | | | || ||| ||| ||||| || ||||| || Sbjct 4427 AATCTTTGCCTTCACATTGTCGATAGTGTCGGAGCTTTCTACTTCCAGAGTGATGGTCTT 4486 Query 20179 GCCGGTCAACGTTTTGACAAAAATTTGCATT 20209 ||| ||||| || || || ||||| |||||| Sbjct 4487 GCCCGTCAATGTCTTCACGAAAATCTGCATT 4517 >seq3045 Length=115554 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 19996 CAACACCAAATGTAGTGTAGATTCTTTTTGTATGTTGTAATCGCCCATAGTTTTAGAATC 20055 ||| || | ||| || ||||| || || || ||||||||||| | | |||| ||| Sbjct 11282 CAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGAGTTCGGCCATC 11341 Query 20056 TTCCAATTGTTTGCCCGCATAAATAAGCCTCTGTTGATCGACGGGCACGCCTTCTTTGTC 20115 |||||||||||| || ||| | || || |||||||| || ||| | ||||| ||||| Sbjct 11342 TTCCAATTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGGGGAATACCTTCCTTGTC 11401 Query 20116 GGCAATTTTTTGTTTCACCTGGCCAACAGAATCGCCAGGTTCCGTTTCCACGGTAATGGT 20175 ||| || ||||| | | ||| | || || || |||| ||| ||||| Sbjct 11402 TTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGT 11461 Query 20176 TTTGCCGGTCAACGTTTTGACAAAAATTTGCAT 20208 || ||||| | ||||| |||||||||||||| Sbjct 11462 CTTTCCGGTGAGAGTTTTCACAAAAATTTGCAT 11494 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419381383037688