Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq29839 145 7e-30 >seq29839 Length=13537 Score = 145 bits (160), Expect = 7e-30 Identities = 575/893 (64%), Gaps = 15/893 (2%) Strand=Plus/Minus Query 12841 ATTTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTT 12900 ||| ||||| | ||| || |||||||| | |||||||| ||||| || || || || Sbjct 5163 ATTAGACATGATAGATGCCTTCTGATATTCACCGACTCTTTTCTCAAAGAAATTAGTCTT 5104 Query 12901 TCCTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACA--ATAGTATTTT 12958 || | |||||||| ||||| |||| || ||||||| ||||| |||| ||| Sbjct 5103 CCCCTGCAACGAAATCAACTCCATCCAATCAAACGGATTTT--GAACATTATAGATTTTG 5046 Query 12959 TTACACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAA 13018 | | || || || | ||| || || || ||||| |||||||| || |||| || Sbjct 5045 CCATATCCCAAGGCTCCAACCAACCTATCTGCCACAAATTCTATGTATTGGCTCATCAAG 4986 Query 13019 TCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATA 13078 || | |||||||| | | || |||| ||| || | ||| | |||||||| Sbjct 4985 TCCCCATTCATTCCAACAAGAGCCACCGGCAAAGCATCACACACAAATTCCCTTTCTATA 4926 Query 13079 TCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGC 13138 ||||| || || | || || || || | | | ||| | | | || | | Sbjct 4925 TCAACGGCCTCTGTTACAATCTCCCTCACTCGATCCTC-ACTCAATTTCTTCCTCAACAA 4867 Query 13139 TTAA-ACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTT 13197 | || ||| || ||| ||||||||||| || | |||||||||| || | |||||| Sbjct 4866 TGAATACAACAAACAAGCAAAATCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTT 4807 Query 13198 TGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCC--AAAATATAGCAGCAAAC 13255 ||| || |||| || ||||| | ||| |||||||| | || ||||| ||||| |||| Sbjct 4806 TGAGAACGTTAATCCAGGCATTAACCCACGTTTTTTCAACCAGAAAATGGAGCAG-AAAC 4748 Query 13256 GAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCTTTCACCATACGTA 13315 ||| || || || ||||| ||||| |||||||| ||| | | | || | Sbjct 4747 -TACCTGAGAAGAAAATTCCCTCAACACAGGCAAACGC---CAA-AATACGCTCGGCGAA 4693 Query 13316 CTATT-TTTACTCTCTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCAT 13374 | ||| | || || ||||||||| ||||| | || || | || || ||| | Sbjct 4692 CGATTCCGTGCTATCAATCCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGAC 4633 Query 13375 ATTTTCTATTGCGTTAAATAAATAAtttttttCCTTACTGTCTAAAATATAAGTATCTAT 13434 | |||| || || || || ||| || || || | | ||||| || || | Sbjct 4632 AGTTTCAATAGCACGGAACAACCGATTCTTCTCGTTTGAATTTTTGATATAGGTTTCAAG 4573 Query 13435 CAATAAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACA 13494 | | || ||||| || ||||| || || || || || |||||||| ||||| ||| Sbjct 4572 GAGAAGACTGTACATCTCGGAATGGATGTTCTCGATGGCAATTTGGAATCCATAGAAAGC 4513 Query 13495 TCTAGCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTAT 13554 |||||| || | || || ||||| || | | | || | || || ||| || Sbjct 4512 TCTAGCTTCAGCAACTTGGACTTCTTTCATGAACCGTCCGGCGAGATTCTCCAAAACGAT 4453 Query 13555 CCCGTCACTAGCAGCaaaaaaaGCAAGTATGTGCTTAATAAAttttttttCGTTTTCTGA 13614 || ||| |||||| || || ||||| | || | || || | ||| |||| | Sbjct 4452 GCCATCAGAAGCAGCGAAGAAGGCAAGGACATGAGTGATGAAATGTTTCTCGTCAGAAGT 4393 Query 13615 CAACTTTAACCAATCTGGAAAATCTTTTGATAAATCTACCTCCTCAACGGTCCAAAAAGA 13674 || | ||| | ||| |||| ||| | ||| || ||||| | ||||| || || Sbjct 4392 TAAGGATTCCCAGTGGCGAAGGTCTTGTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGA 4333 Query 13675 AGCAACAGCCTTCTTATACATCATCCATATATCCTTATAAACAATGGGAAACA 13727 || | || ||||| |||||| ||| || | |||| ||| || |||| Sbjct 4332 GGCTTCGGCTTTCTTGTACATCTCCCAGATTTGAGGATAATGAATTGGGAACA 4280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430770993435696