Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq8166 134 1e-26 seq26478 91.5 1e-13 seq3045 86.0 5e-12 seq22339 84.2 2e-11 >seq8166 Length=147256 Score = 134 bits (148), Expect = 1e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558 ||| || || | |||||| || | ||| || ||| |||||| || |||||||| || || Sbjct 120220 ACCACCACGGAGCCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 120279 Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618 | | ||| | |||||||||||||||||| || |||| | ||||||||| ||| ||| Sbjct 120280 AAGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGG 120339 Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678 | | ||||||||| ||| || ||| | | | |||||||| | | ||| Sbjct 120340 TATTCCCTCCTTGTCCTGAATCTTTGCCTTAACATTATCGATGGTATCAGAACTCTCGAC 120399 Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATCGTGTC 48732 ||||| |||||||| || ||||| || |||||||| || |||||||| |||| Sbjct 120400 CTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCATATTGTC 120453 >seq26478 Length=75715 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/193 (72%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||| || || ||||| || || | ||| ||||||| |||||||| ||| || || Sbjct 13929 TCCTTCTGGATATTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAA 13870 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || ||||||||||| || || | | ||||||||| || || ||||| | Sbjct 13869 ATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTGACATTG 13810 Query 48656 GCTATGGTATCGGTAGACTC-CGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713 | |||||||||| || ||| || | |||| || ||||| ||||| || || ||||||| Sbjct 13809 TCAATGGTATCGG-AG-CTCTCGACTTCGAGGGTAATGGTCTTACCCGTTAGGGTTTTCA 13752 Query 48714 CAAAAATCTGCAT 48726 | || |||||||| Sbjct 13751 CGAAGATCTGCAT 13739 >seq3045 Length=115554 Score = 86.0 bits (94), Expect = 5e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTG 48582 ||||| || |||||| ||||||||||| |||| ||| ||| | | ||||| ||||| Sbjct 11064 TGAAGAGTTGACTCCTTCTGAATGTTGTAGTCAG-CAAGAGTCCTTCCATCCTCAAGCTG 11122 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | | || || | |||||| || || | | |||||| ||| |||||| Sbjct 11123 CTTTCCGGCAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTATCCTGAATTTT 11182 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | |||||||||| | ||| ||| | || |||||||| || || Sbjct 11183 CGCCTTAACATTGTCGATGGTATCGGAACTCTCGACCTCAAGGGTGATGGTTTTTCCAGT 11242 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 | ||| || || || |||||||| Sbjct 11243 CAAAGTCTTAACGAAGATCTGCAT 11266 >seq22339 Length=139203 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCT-CGTCCTCCAGCTG 48582 ||||| ||| |||||| |||||||||||||||| | | ||| | | ||||||||||| Sbjct 89878 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAG-CGAGAGTCCTTCCATCCTCCAGCTG 89936 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | | |||||| ||| || | | |||||||||| |||||| Sbjct 89937 CTTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATTTT 89996 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 || | | | || || || | |||| ||| | || ||||| || ||||| Sbjct 89997 AGCTTTTACATTATCGATCGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCGGT 90056 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 | |||||||| || ||||||||| Sbjct 90057 CAAGGTTTTCACGAAGATCTGCATC 90081 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421044566808248