Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq15074 122 5e-23 seq15507 114 7e-21 seq9264 111 8e-20 seq7547 109 3e-19 seq9785 107 1e-18 seq27412 105 3e-18 seq27409 105 3e-18 seq15177 104 1e-17 seq15106 104 1e-17 seq7539 104 1e-17 seq7401 104 1e-17 seq30741 102 4e-17 seq14027 102 4e-17 seq15250 100 1e-16 seq28770 93.3 2e-14 >seq15074 Length=104269 Score = 122 bits (134), Expect = 5e-23 Identities = 84/95 (88%), Gaps = 3/95 (3%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||| |||||||||| ||||||||||| | | |||||||| ||||||||||||||| Sbjct 88891 AGAATAAATAAAAAAT---ATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 88947 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||||||||||||| |||| Sbjct 88948 TAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 88982 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| ||| || ||||| ||||||||||||||||||||| ||||||| |||||| Sbjct 94767 TGGCCCATGCAAGTCTCAAACCTACGACCTTCGCGTTATTAGCACAACGCTCTAACCAAC 94826 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 94827 TGAGCTAATAGGCC 94840 Score = 89.7 bits (98), Expect = 3e-13 Identities = 69/81 (85%), Gaps = 4/81 (5%) Strand=Plus/Plus Query 11434 TAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||||| ||||| | ||||||||||||| | | |||||||| |||||||||||||| Sbjct 50588 TAGAATT--TAAAACA--AAATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTA 50643 Query 11494 TTAGCACGACGCTCTRACCAA 11514 ||||||||||||| | ||||| Sbjct 50644 TTAGCACGACGCTATAACCAA 50664 >seq15507 Length=27693 Score = 114 bits (126), Expect = 7e-21 Identities = 84/98 (86%), Gaps = 3/98 (3%) Strand=Plus/Minus Query 11435 AGAATTAATAAAAAATCAAA---TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGT 11491 |||| | | ||||||| ||| |||||||||| | | |||||||| |||||||||||| Sbjct 18512 AGAAGTGAAAAAAAATGAAAAAATTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGT 18453 Query 11492 TATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||| ||||||||||||||| |||| Sbjct 18452 TATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 18415 >seq9264 Length=13597 Score = 111 bits (122), Expect = 8e-20 Identities = 81/95 (85%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 |||| ||| || ||| || |||||||||| | | |||||||| ||||||||||||||| Sbjct 12327 AGAAATAAAAAGAAACTAATTTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTAT 12386 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||| ||||||||||||||| |||| Sbjct 12387 TAGCACGATGCTCTAACCAACTGAGCTAATAGGCC 12421 >seq7547 Length=36399 Score = 109 bits (120), Expect = 3e-19 Identities = 78/89 (88%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 11442 ATAAAAAATCAAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||| ||||| ||||||||| | | |||||||| ||||||||||||||||||| | Sbjct 17008 ATTAAAAAACAAATATGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCTC 17067 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| ||||||||||||||| |||| Sbjct 17068 GACGCTCTAACCAACTGAGCTAATAGGCC 17096 >seq9785 Length=14329 Score = 107 bits (118), Expect = 1e-18 Identities = 69/76 (91%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 7610 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 7669 Query 11516 TGAGCTAATGGGCCGT 11531 ||||||||| |||||| Sbjct 7670 TGAGCTAATAGGCCGT 7685 >seq27412 Length=148526 Score = 105 bits (116), Expect = 3e-18 Identities = 71/79 (90%), Gaps = 1/79 (1%) Strand=Plus/Minus Query 11452 AAAT-TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 108485 AAATGTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 108426 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 108425 CCAACTGAGCTAATAGGCC 108407 >seq27409 Length=43864 Score = 105 bits (116), Expect = 3e-18 Identities = 87/105 (83%), Gaps = 5/105 (5%) Strand=Plus/Plus Query 11425 AGGGAAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACC 11484 ||| ||||| | | || | |||||| | ||||||||| | | |||||||| ||||| Sbjct 28876 AGGAAAATAAAAACTT--TGAAAAATAA---TGGCCCATGCAGGTCTCGAACCTGCGACC 28930 Query 11485 TTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||||| ||||||||||||||| |||| Sbjct 28931 TTCGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 28975 >seq15177 Length=59920 Score = 104 bits (114), Expect = 1e-17 Identities = 73/84 (87%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 11446 AAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGC 11505 ||||| | | ||||||||| | | |||||||| ||||||||||||||||||||||||| Sbjct 41106 AAAATGATACTGGCCCATGCAGGTTTCGAACCTATGACCTTCGCGTTATTAGCACGACGC 41165 Query 11506 TCTRACCAACTGAGCTAATGGGCC 11529 ||| ||||||||||||||| |||| Sbjct 41166 TCTAACCAACTGAGCTAATAGGCC 41189 Score = 102 bits (112), Expect = 4e-17 Identities = 83/102 (81%), Gaps = 6/102 (6%) Strand=Plus/Minus Query 11434 TAGAATTAATAAAAAATCAAATT------GGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 ||||| |||| ||||| || || |||||||| ||| || ||||| |||||||| Sbjct 35628 TAGAAATAATTAAAAAACATTTTAACAATGGCCCATGCAAGTCTCAAACCTACGACCTTC 35569 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||| ||||||| ||||||||||||||| |||| Sbjct 35568 GCGTTATTAGCACAACGCTCTAACCAACTGAGCTAATAGGCC 35527 Score = 89.7 bits (98), Expect = 3e-13 Identities = 72/87 (83%), Gaps = 3/87 (3%) Strand=Plus/Plus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| | ||||||||| | | || ||||| ||||||| |||||||||||| || Sbjct 36827 TAAAAAATAA---TGGCCCATGCAGGTCTCAAACCTGCGACCTTTGCGTTATTAGCATGA 36883 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||| ||||||| |||| Sbjct 36884 CGCTCTAACCAACTAAGCTAATAGGCC 36910 >seq15106 Length=39787 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 37614 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 37555 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 37554 TGAGCTAATAGGCC 37541 >seq7539 Length=22342 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 2670 TGGCCCATGCAGGTCTCGAACCTACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 2611 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2610 TGAGCTAATAGGCC 2597 Score = 100 bits (110), Expect = 1e-16 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| ||| || ||||| ||||||||||||||||||||| ||||||| |||||| Sbjct 2955 TGGCCCATGCAAGTCTCAAACCTACGACCTTCGCGTTATTAGCACAACGCTCTAACCAAC 2896 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2895 TGAGCTAATAGGCC 2882 Score = 91.5 bits (100), Expect = 8e-14 Identities = 73/88 (83%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 11442 ATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||| ||| | ||||| || ||| || ||||| ||||||||||||||||||||| Sbjct 3813 ATAAATTTTCATAATGGCC--TGCAAGTCTCAAACCTACGACCTTCGCGTTATTAGCACA 3756 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||| ||||||||||||||| |||| Sbjct 3755 ACGCTCTAACCAACTGAGCTAATAGGCC 3728 >seq7401 Length=25335 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 10714 TGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 10655 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 10654 TGAGCTAATAGGCC 10641 >seq30741 Length=62040 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||| ||||| ||||| Sbjct 48679 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGATGCTCTAACCAA 48620 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 48619 CTGAGCTAATAGGCC 48605 >seq14027 Length=57445 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||| ||||| || Sbjct 20575 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGATGCTCTAAC 20634 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 20635 CAACTGAGCTAATAGGCC 20652 >seq15250 Length=20519 Score = 100 bits (110), Expect = 1e-16 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGAT-CGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 ||| ||||||||| | | | ||||||| ||||||||||||||||||||||||||||| | Sbjct 16842 AAAATGGCCCATGCAGGTTTTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 16901 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 16902 CCAACTGAGCTAATAGGCC 16920 >seq28770 Length=69327 Score = 93.3 bits (102), Expect = 2e-14 Identities = 72/86 (84%), Gaps = 4/86 (5%) Strand=Plus/Minus Query 11443 TAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||||||| |||||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 18185 TAAAAAAT----TTGGCCCATGCAGGTTTCGAACCTGCGACCTTCGCGTTATTAGCACGA 18130 Query 11503 CGCTCTRACCAACTGAGCTAATGGGC 11528 | | | ||||||||||||||| ||| Sbjct 18129 CACCCCAACCAACTGAGCTAATAGGC 18104 Lambda K H 0.638 0.409 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261362932682848