Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq14043 165 1e-36 seq34832 150 3e-32 seq24498 147 3e-31 seq7365 122 1e-23 >seq14043 Length=71935 Score = 165 bits (182), Expect = 1e-36 Identities = 196/266 (74%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || |||||||| || | ||| |||| ||||| || || || |||||||| || || Sbjct 43026 GCAAAGCGTCACCGGAAGGTTCTGAGAGACAACATTCAGGGTATTACCAAGCCTGCCATT 42967 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||| |||||||| | ||||| || |||||| || ||||||| |||||||||| | Sbjct 42966 CGCCGTTTGGCTCGTAGAGGTGGTGTGAAGCGTATCAGTGGATTGATCTATGAAGAAACC 42907 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 | | ||||||||||||||||||| ||| || || | ||||||| | || || ||| Sbjct 42906 AGAGGTGTTTTGAAGATCTTCCTCGAGAATGTGATTCGTGATGCTGTTACGTACACTGAG 42847 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||||| | ||||| || || |||||||| | || ||||| |||||| | || || Sbjct 42846 CACGCTAGGAGGAAGACGGTGACTGCCATGGATGTGGTTTATGCCTTGAAAAGGCAGGGA 42787 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 | | | |||||||| ||| |||| Sbjct 42786 AGGACTTTGTATGGTTTCGGAGGTTA 42761 Score = 159 bits (176), Expect = 5e-35 Identities = 180/241 (75%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| || |||||||| || || || ||| |||||||| | ||||| | Sbjct 47943 GAGATAACATTCAAGGCATTACCAAGCCTGCAATTCGCCGTTTGGCTCGTAGGGGTGGTG 47884 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| || |||||||||| | | | ||||||||||| |||||| Sbjct 47883 TGAAGCGTATCAGTGGGTTAATCTATGAAGAAACCAGAGGGGTTTTGAAGATTTTCCTCG 47824 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | |||||| | ||||||||||||||||| | ||||| || || Sbjct 47823 AGAATGTGATTCGCGATGCTGTGACCTATACCGAGCACGCTAGGAGGAAGACGGTGACTG 47764 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 ||||||| | || |||||||||||| | || || | | | |||||||| ||| ||| Sbjct 47763 CCATGGACGTGGTTTATGCATTGAAAAGGCAGGGAAGGACTTTGTATGGTTTCGGAGGTT 47704 Query 16698 A 16698 | Sbjct 47703 A 47703 Score = 150 bits (166), Expect = 3e-32 Identities = 178/241 (74%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| || || || |||||||| || || || ||| |||||||| | ||||| | Sbjct 36942 GAGATAACATTCAGGGCATTACCAAGCCTGCAATTCGCCGTTTGGCTCGTAGAGGTGGTG 36883 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | |||||| || ||| ||| |||| ||||| | | | |||||||||||| |||||| Sbjct 36882 TGAAGCGTATCAGTGGGTTGATCTACGAAGAAACCAGAGGTGTTTTGAAGATTTTCCTCG 36823 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||||| | ||| || ||||| || | | ||||| || || Sbjct 36822 AGAATGTGATTCGTGATGCTGTTACCTACACTGAGCATGCAAGGAGGAAGACGGTGACTG 36763 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | |||||||| |||||| | ||||| | | | || ||||| ||| ||| Sbjct 36762 CCATGGATGTGGTCTATGCCTTGAAAAGGCAAGGGAGGACTTTGTACGGTTTCGGAGGTT 36703 Query 16698 A 16698 | Sbjct 36702 A 36702 Score = 134 bits (148), Expect = 2e-27 Identities = 175/242 (72%), Gaps = 0/242 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 ||||| ||||| || || || |||||||| || || || ||| | ||||| | || || Sbjct 32106 CGAGACAACATTCAGGGCATTACCAAGCCTGCCATTCGCCGTTTAGCTCGCAGAGGCGGT 32047 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 || |||||| || ||||||| |||||||||| | | | ||||||||||||||||| Sbjct 32046 GTGAAGCGTATCAGTGGATTGATCTATGAAGAAACCAGAGGCGTTTTGAAGATCTTCCTT 31987 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| || || | ||||||| | || || |||||||||| | ||||| || || Sbjct 31986 GAGAATGTGATTCGTGATGCTGTTACGTACACTGAGCACGCTAGGAGGAAGACGGTGACT 31927 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGT 16696 |||||||| | || ||||| |||||| | || || | | | || ||||| ||| || Sbjct 31926 GCCATGGATGTGGTTTATGCTTTGAAAAGGCAGGGAAGGACTCTGTACGGTTTCGGAGGT 31867 Query 16697 TA 16698 || Sbjct 31866 TA 31865 >seq34832 Length=40648 Score = 150 bits (166), Expect = 3e-32 Identities = 193/266 (73%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||||| ||| |||| ||||||||||||||||||||||| || || Sbjct 4050 GCCAAGAGGCATCGCAAGGTTCTAAGAGACAACATCCAAGGAATCACCAAGCCGGCCATT 4109 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||| || | ||||| || || |||||| || || || |||| || |||| | Sbjct 4110 CGCCGTCTTGCCAGGCGTGGCGGCGTAAAGCGTATCAGCGGCCTGATCTACGAGGAGACT 4169 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | |||||||||||| ||| || || | || || || ||| || ||| Sbjct 4170 CGCGGCGTTCTCAAGATCTTCCTCGAGAATGTCATTCGCGACGCCGTCACCTACACTGAG 4229 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| |||||| ||||||| |||| || || | || | ||||| Sbjct 4230 CACGCTCGCCGGAAGACCGTCACCGCCATGGACGTCGTGTACGCGCTCAAGAGGCAAGGT 4289 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | ||||| |||||| |||| Sbjct 4290 CGTACTCTGTATGGCTTTGGAGGTTA 4315 >seq24498 Length=8214 Score = 147 bits (162), Expect = 3e-31 Identities = 177/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 16458 GAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAG 16517 |||||||||| ||||| || || ||||| || || || ||| |||||||||| || || | Sbjct 5946 GAGATAACATTCAAGGCATTACAAAGCCTGCAATTCGCCGTTTGGCTCGTCGAGGCGGTG 6005 Query 16518 TCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCA 16577 | ||| | || || ||| | |||||||| | | | ||||||||||||||||| Sbjct 6006 TTAAGAGAATCAGCGGTTTGATTTATGAAGAAACCAGAGGCGTTTTGAAGATCTTCCTTG 6065 Query 16578 AGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCT 16637 ||| || || | ||||||| | ||| ||||||||||||| | | ||||| || ||| Sbjct 6066 AGAATGTCATTCGTGATGCTGTGACCTACACCGAGCACGCTAGAAGGAAGACGGTGACCG 6125 Query 16638 CCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGGAAGTT 16697 |||||||| | || ||||| |||||| | || || | | | || ||||| ||| ||| Sbjct 6126 CCATGGATGTGGTTTATGCCTTGAAAAGGCAGGGAAGGACTTTGTACGGTTTCGGAGGTT 6185 Query 16698 A 16698 | Sbjct 6186 A 6186 >seq7365 Length=98984 Score = 122 bits (134), Expect = 1e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16460 GATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTC 16519 |||||||| |||||||| || ||||| || || || || |||||||| | || || || Sbjct 3310 GATAACATTCAAGGAATTACGAAGCCTGCAATTCGGCGATTGGCTCGTAGAGGCGGTGTG 3369 Query 16520 AAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAG 16579 ||||| || ||| ||| ||||||| || | | | ||||||||||||||||| || Sbjct 3370 AAGCGAATCAGTGGTTTGATCTATGAGGAAACCAGAGGCGTTTTGAAGATCTTCCTTGAG 3429 Query 16580 ACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCC 16639 | || || | ||||| | ||| || |||||||| | | ||||| || ||| || Sbjct 3430 AATGTGATTCGCGATGCCGTGACCTACACAGAGCACGCCAGGAGGAAGACGGTGACCGCC 3489 Query 16640 ATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| |||| ||||| ||||| | || || Sbjct 3490 ATGGATGTCGTTTATGCGCTGAAAAGGCAGGG 3521 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79038400971864