Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq7398 206 3e-48 seq8682 178 2e-39 seq1209 131 2e-25 seq16876 100 4e-16 seq14341 98.7 1e-15 seq3485 84.2 3e-11 seq3512 82.4 1e-10 >seq7398 Length=4807 Score = 206 bits (228), Expect = 3e-48 Identities = 218/287 (76%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 138508 CAAATACTTTTAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTG 138567 ||||||| || | || ||| | || ||||||| |||||||| ||||||||||| |||| Sbjct 2195 CAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTG 2254 Query 138568 CTAACCGTTACTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACT 138627 | ||||| | ||||| |||||||||| |||||||| ||||| |||||| | || | Sbjct 2255 CAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATT 2314 Query 138628 TCTTTATGCTCTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTC 138687 |||||||| | ||||| || || | ||| | |||| ||| | |||| | ||||| Sbjct 2315 TCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTT 2374 Query 138688 TTGCTCTTAACCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATC 138747 | | |||||||||| || ||||| ||||| || || |||||||||| ||| ||||||| Sbjct 2375 TGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGATC 2434 Query 138748 CTGAATTCGAGACCTTCTACACCAAGAACATTCTTCTGAATGAAGGT 138794 || |||| ||||| ||||| ||||| || ||||| | || ||||| Sbjct 2435 CTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGGT 2481 >seq8682 Length=13014 Score = 178 bits (196), Expect = 2e-39 Identities = 190/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 136067 ATTGTTGCTGCTCATGGTTACTTCGGTCGTCTGATCTTCCAATATGCGTCGTTCAACAAC 136126 || || |||||||||||||| || || || |||||||||||||||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 136127 TCTCGTTCGCTACACTTTTTCCTTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCC 136186 |||||||| |||| || ||||| |||||||||||||| || ||||| ||||| | || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 136187 CTGGGCGTATCTACGATGGCGTTCAACCTCAATGGATTCAACTTCAACCAGTCCATTGTA 136246 | || | || ||||| |||||| | ||||| ||||| |||||||| || | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 136247 TCTTCTGAAGGTCGTGTACTCAACACCTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGT 136306 | | ||||||||||| | || |||||||| ||| | | || |||||| ||| ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 136307 ATGGAGGTGAT 136317 ||||| || || Sbjct 6200 ATGGAAGTTAT 6210 >seq1209 Length=37697 Score = 131 bits (144), Expect = 2e-25 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 136031 GGTTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTC 136090 ||||| | ||||||||||| ||||| |||| | || || |||||||||||||| || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 136091 GGTCGTCTGATCTTCCAATATGC--GTCGTTCAACAACTCTCGTTCGCTACACTTTTTCC 136148 || || |||||||||||||||| | ||||||||||||| ||| |||| || |||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 136149 TTGCTGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGT 136208 ||||||||||||| || |||||||||| | || | || | || ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 136209 TCAACCTCAATGGATTCAACTTCAAC 136234 ||||| | ||||| | || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq16876 Length=31318 Score = 100 bits (110), Expect = 4e-16 Identities = 162/232 (70%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 136098 TGATCTTCCAATATGC--GTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGC 136155 || ||||||||||||| || ||||||||||| ||||| |||| || ||||| ||||| Sbjct 28055 TGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGC 28114 Query 136156 TTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAACCT 136215 ||||||||| | |||| ||| | || | || | || ||||| |||||| | Sbjct 28115 TTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTT 28170 Query 136216 CAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACACCTG 136275 ||| | | || |||||||| | | || | | |||||| |||| | | ||||| Sbjct 28171 AAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTG 28230 Query 136276 GGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 | ||||| | | || | |||| ||| |||| ||| || ||||| || ||| Sbjct 28231 GCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGT 28282 >seq14341 Length=38040 Score = 98.7 bits (108), Expect = 1e-15 Identities = 74/86 (86%), Gaps = 2/86 (2%) Strand=Plus/Minus Query 136098 TGATCTTCCAATATGC--GTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGCTGC 136155 |||||||||||||||| || ||||||||||||||||| |||| || ||||| ||||| Sbjct 2948 TGATCTTCCAATATGCTAGTGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGC 2889 Query 136156 TTGGCCTGTTGTCGGTATCTGGTTTG 136181 || |||||| || ||||||||||||| Sbjct 2888 TTCGCCTGTAGTAGGTATCTGGTTTG 2863 >seq3485 Length=85743 Score = 84.2 bits (92), Expect = 3e-11 Identities = 108/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 137865 TTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGGTCTGGA 137924 |||||| | ||||||||||| | | || || || || ||||| |||||||| || Sbjct 21335 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 21394 Query 137925 CTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACAACGTTT 137984 ||| | || ||||| ||| ||||| ||| | || || ||| |||| || ||||| ||| Sbjct 21395 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 21454 Query 137985 GTTACAAGCTGGTACACCCACGGGTTGGC 138013 || || ||||| ||||| || ||||| Sbjct 21455 GTAACTTCATGGTATACCCATGGATTGGC 21483 >seq3512 Length=63441 Score = 82.4 bits (90), Expect = 1e-10 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 138536 TCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTACTGGTCGCAAATCTTTGG 138595 ||||| |||||||| ||||||||| | |||||||||| | ||||| ||||||||||| Sbjct 43987 TCAAGTTGAAGAAACTTATTCAATGATCACTGCTAACCTCTCTTGGTCCCAAATCTTTGG 43928 Query 138596 AATTGCTTTTAGTAATAAGCGTTGG 138620 |||||||| ||||| |||||| Sbjct 43927 GGTTGCTTTTTCCAATAAACGTTGG 43903 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627652069299200