Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq8682 156 1e-33 seq1209 127 6e-25 seq16876 120 9e-23 >seq8682 Length=13014 Score = 156 bits (172), Expect = 1e-33 Identities = 188/253 (74%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 19982 TATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCTTCTTTCAATAA 20041 ||| || ||||| || || || ||||| ||||||| || |||||||| |||||| || Sbjct 5959 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAA 6018 Query 20042 TTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTC 20101 |||||||||||||||||||| || ||| ||| || || || || || ||| | ||| | Sbjct 6019 CTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGC 6078 Query 20102 CATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGT 20161 | || || ||||||||||||||||| | |||||||| || || ||||| || ||||| Sbjct 6079 TTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGT 6138 Query 20162 TGAT-GTCAACGGAAAGATAATCCCAACATGGGCTGATGTATTAAATAGAGCTAACCTCG 20220 |||| ||||| || |||| || ||||||||| | | || | ||||| || | Sbjct 6139 TGATAGTCAA-GGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTG 6197 Query 20221 GATTTGAAGTTAT 20233 | | |||||||| Sbjct 6198 GTATGGAAGTTAT 6210 >seq1209 Length=37697 Score = 127 bits (140), Expect = 6e-25 Identities = 174/242 (72%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 19911 ATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGGCTATAAGTTCGGGCAAGATGAA 19970 |||| |||||| | || ||| ||| || | || |||| ||||| ||||| ||| Sbjct 32466 ATCAGGGAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTCGGTCAAGAGGAA 32525 Query 19971 GAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTGATATTTCAATATGCT 20030 || || | | |||| || ||||| || || || ||||| ||||||| || ||||||||| Sbjct 32526 GAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 32585 Query 20031 --TCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGCTACTTTCCCCGTGGTTGGCA 20088 | |||||| || |||| ||||||||||||||| | ||| ||| || | || | | Sbjct 32586 AATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTA 32645 Query 20089 TATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAACCTTAATGGTTTTAACTTTA 20148 | ||| | ||| | | || || |||||||| |||||||| | ||||||| || || | Sbjct 32646 TCTGGTTCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGAATGGTTGAAATTTCA 32705 Query 20149 AC 20150 || Sbjct 32706 AC 32707 >seq16876 Length=31318 Score = 120 bits (132), Expect = 9e-23 Identities = 199/281 (71%), Gaps = 10/281 (4%) Strand=Plus/Plus Query 20005 TTGGGAGATTGATATTTCAATATGCT--TCTTTCAATAATTCTCGTTCTTTACATTTCTT 20062 |||| ||||| | || ||||||||| | |||||| || || |||||||||||||| || Sbjct 28046 TTGGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATT 28105 Query 20063 TCTTGCTACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGC 20122 || ||| ||| || || | || | | | || | | || || |||||||||| Sbjct 28106 CCTAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGC 28161 Query 20123 TTTCAACCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGAT-GTCAACGGAAAGATAA 20181 ||||||| | ||| ||| || || ||||| | ||||||||| ||||| || | ||| Sbjct 28162 TTTCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAA-GGTCATGTAA 28220 Query 20182 TCCCAACATGGGCTGAT-GTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAG 20240 | | || ||| | ||| |||||| | ||||| || || ||||||||||| || Sbjct 28221 TTCATACCTGGCCAGATATTATTAACCA-TGCTAATCTTGGTAGGGAAGTTATGCATGAA 28279 Query 20241 CGCAATGCTCATAACTTCCCACTTGATTTAGCTTCGGCTGA 20281 || ||||| || |||||||| || || ||||| | | ||| Sbjct 28280 CGTAATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144372564859488