Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq8682 165 1e-35 seq16876 129 9e-25 >seq8682 Length=13014 Score = 165 bits (182), Expect = 1e-35 Identities = 187/251 (75%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 212263 ATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAAC 212322 ||||| ||||| ||||| || || || || | |||||||| |||||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 212323 AGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCT 212382 | |||||| |||||||| || | |||||||| | || | ||||| ||| || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 212383 ATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTT 212442 | ||||| |||| ||||| |||||| ||||||| ||||| ||||||||||| || ||| Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 212443 GATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGT 212502 ||| |||| || || ||| |||| |||| || ||||| | || || |||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 212503 ATGGAAGTTAT 212513 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 129 bits (142), Expect = 9e-25 Identities = 184/258 (71%), Gaps = 6/258 (2%) Strand=Plus/Plus Query 212297 TCTTCCAGTATGCA--TCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATG 212354 ||||||| ||||| | ||||||||| | | |||||| || ||||| || | || Sbjct 28058 TCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGCTTG 28117 Query 212355 GCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACCTAAA 212414 |||||| || || ||| || || | ||||| |||| ||||| |||||| |||| Sbjct 28118 GCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAA 28173 Query 212415 TGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACTTGGGG 212474 | | | || |||||||||| || |||||| |||| | || ||| ||| ||| Sbjct 28174 TTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTGGCC 28233 Query 212475 TGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCACACAA 212534 ||| || ||||| || || ||||||| |||||||||||| ||| | ||||| || || Sbjct 28234 AGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCAAAA 28293 Query 212535 CTTCCCACTTGACTTAGC 212552 |||||| || ||| |||| Sbjct 28294 CTTCCCTCTAGACCTAGC 28311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807148918978880