Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq8682 156 5e-33 seq1209 131 2e-25 seq16876 123 3e-23 seq9099 107 2e-18 seq7398 100 3e-16 seq3485 93.3 5e-14 seq3977 86.0 7e-12 >seq8682 Length=13014 Score = 156 bits (172), Expect = 5e-33 Identities = 189/255 (74%), Gaps = 8/255 (3%) Strand=Plus/Plus Query 171359 ATTGTTGCTGCTCATGGATACTTCGGTAGATTAATCTTCCAGTATGCATCATTCAACAAC 171418 || || ||||||||||| || || || |||| |||||||| |||||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 171419 TCTCGTTCATTACACTTCTTCCTCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCT 171478 |||||||| ||||| |||||||| |||| | |||||||| || | ||||| ||| || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 171479 ATGGGTATCTGTACAATGGCATTCAACCTTAACGGATTCAACTTCAACCAATCAGTTGTA 171538 | ||||| | || ||||| |||||| | || || ||||| ||||||||||| || || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 171539 GATG--CAAA--CGGAAAGATTGTACCAACATGGGGAGATGTTCTTAACAGAGCAAACCT 171594 ||| ||| || | | |||| |||| ||| || ||||| | || || || Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACC----TGGGCTGATATTATTAACCGTGCTAATCT 6195 Query 171595 TGGAATGGAAGTTAT 171609 ||| ||||||||||| Sbjct 6196 TGGTATGGAAGTTAT 6210 >seq1209 Length=37697 Score = 131 bits (144), Expect = 2e-25 Identities = 153/206 (74%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 171323 GGCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTC 171382 || |||| ||||| ||||| |||||||| | | | || || ||||||||||| || || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 171383 GGTAGATTAATCTTCCAGTATGC--ATCATTCAACAACTCTCGTTCATTACACTTCTTCC 171440 || |||| |||||||| ||||| || ||||||||||||| ||| ||||| ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 171441 TCGCTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCAT 171500 |||| | |||| ||| || | ||||| ||| || | ||||| | || ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 171501 TCAACCTTAACGGATTCAACTTCAAC 171526 ||||| | || || | || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq16876 Length=31318 Score = 123 bits (136), Expect = 3e-23 Identities = 192/273 (70%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 171387 GATTAATCTTCCAGTATGCA--TCATTCAACAACTCTCGTTCATTACACTTCTTCCTCGC 171444 |||| ||||||| ||||| | ||||||||||| ||||| ||||| || ||||| || Sbjct 28052 GATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGC 28111 Query 171445 TGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 171504 || | |||||| | || ||| || || | ||||| | || ||||| ||||| Sbjct 28112 TGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAA 28167 Query 171505 CCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAAC 171564 | | || | | || |||||||||| || || ||| | || | | | | || Sbjct 28168 CTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATAC 28227 Query 171565 ATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGC 171624 ||| |||| || ||||| || || ||||| | |||||||||||||||| | ||||| Sbjct 28228 CTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGC 28287 Query 171625 ACACAACTTCCCACTAGACCTAGCATCTGCTGA 171657 || |||||||| ||||||||||| ||| ||| Sbjct 28288 GCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq9099 Length=14125 Score = 107 bits (118), Expect = 2e-18 Identities = 185/271 (68%), Gaps = 11/271 (4%) Strand=Plus/Minus Query 171837 TTCATCGGATGGTCTGGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGG 171896 ||| || | ||||| |||| || || || |||||||| || | || ||||||||||| Sbjct 887 TTCCTCTGTTGGTCCAGTCTATTGCTCTTTCCTTGTGCCTATTTTGCTGTCGGAGGTTGG 828 Query 171897 TTCGTAGGAACTACTTTCGTGACCTCATGGTACACACATGGTATT-----------GCAT 171945 || ||| || || | || || |||||||| || |||||||| ||| Sbjct 827 TTTACAGGTACAACCTCTGTAACTTCATGGTATACCCATGGTATACCCATGGATTGGCAA 768 Query 171946 CCTCATATCTTGAGGGAGCAAACTTTTTAACTGCAGCAGTATCAACACCTGGTGATGCTA 172005 || ||| | || ||| ||||| |||||||| ||| | || || |||| | || | Sbjct 767 GTTCCTATTTGGAAGGATGCAACTTCTTAACTGCTGCAATTTCGACTCCTGCTAATAGTT 708 Query 172006 TGGGTCATAGTCTATTGTTCCTATGGGGACCTGAGGCACAAGGAGATCTTGTACGATGGT 172065 | | || | | ||||| ||||||| | ||| ||| |||||||| || | |||| Sbjct 707 TAGCCCACTCTTTGTTGTTATTATGGGGTCTTGAAGCATAAGGAGATTTTACTTGTTGGT 648 Query 172066 TTCAATTAGGTGGACTATGGAACTTTGTAGC 172096 |||||||||||| || |||| ||||| || Sbjct 647 GTCAATTAGGTGGTCTGTGGATTTTTGTTGC 617 >seq7398 Length=4807 Score = 100 bits (110), Expect = 3e-16 Identities = 170/245 (69%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 172494 GAAGAAACTTATAGTATGATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCA 172553 |||||||||||| ||| | ||||| ||| | || ||||| | || ||||| | || Sbjct 2230 GAAGAAACTTATTCAATGGTCACTGCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCT 2289 Query 172554 TTTTCAAACAAAAGATTCTTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGG 172613 ||||| || ||| | | ||||| ||| ||||||| || ||||| || | ||| | ||| Sbjct 2290 TTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGG 2349 Query 172614 ACATCATCTATAGGTATCGTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCT 172673 | || | || | || ||| | | ||||||| | || || ||||| || ||| Sbjct 2350 ATGAGTGCTCTTGGAGTAGTTGGTTTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCT 2409 Query 172674 CAAGAGATAAGAGCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTT 172733 || || || | | ||| ||||| || | ||||| || ||||| || || || |||| | Sbjct 2410 CAGGAAATTCGTGTAGCGGAAGATCCTAAATTTGAGACTTTCTATACCAAAAATATTC-T 2468 Query 172734 CTTAA 172738 ||||| Sbjct 2469 CTTAA 2473 >seq3485 Length=85743 Score = 93.3 bits (102), Expect = 5e-14 Identities = 103/136 (76%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 171807 GATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGTCTTTTACTTTTA 171866 ||||| |||||| ||| || |||||||| || | || ||||| ||||| || || || Sbjct 21347 GATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCTTT 21406 Query 171867 CCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACTTTCGTGACCTCATGG 171926 |||||||| || | || ||||||||||||| ||| || || || || || |||||| Sbjct 21407 CCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCATGG 21466 Query 171927 TACACACATGGTATTG 171942 || || ||||| |||| Sbjct 21467 TATACCCATGG-ATTG 21481 >seq3977 Length=13071 Score = 86.0 bits (94), Expect = 7e-12 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 171572 GATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATGCACACAAC 171631 ||| || | ||| | || || ||||| |||||||||||||||||| | ||||| |||||| Sbjct 6 GATATTATAAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAAC 65 Query 171632 TTCCCACTAGACCTAGC 171648 ||||| ||||||||||| Sbjct 66 TTCCCTCTAGACCTAGC 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 569981897766720