Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq29839 242 5e-59 seq9269 89.7 6e-13 >seq29839 Length=13537 Score = 242 bits (268), Expect = 5e-59 Identities = 581/874 (66%), Gaps = 16/874 (2%) Strand=Plus/Minus Query 33013 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAATGATATATTT 33072 || || |||||||| || | ||| || || |||||||| || || | ||| || || Sbjct 5144 TTCTGATATTCACCGACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 5085 Query 33073 TCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 33132 ||||| ||||||||||||| ||||||||| ||||| | ||||||| | || | Sbjct 5084 TCCATCCAATCAAACGGATTTTGAACATTATAGATTTTGCCATATCCCAAGGCTCCAACC 5025 Query 33133 AATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 33192 || ||||| || || |||||||| ||| |||||| || | ||||||||| | ||| Sbjct 5024 AACCTATCTGCCACAAATTCTATGTATTGGCTCATCAAGTCCCCATTCATTCCAACAAGA 4965 Query 33193 TTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGATACCGCATCTGTTATAATA 33252 || || | ||| || | |||||| ||| || || || ||||||| ||| Sbjct 4964 GCCACCGGCAAAGCATCACACACAAATTCCCTTTCTATATCAACGGCCTCTGTTACAATC 4905 Query 33253 GATCTAACGGTTTCTTCACTCGGTGGATGCAATAAATGTTTAAACATCAAACATGCGAAA 33312 || || || |||||| | | | || | | ||| |||||| || ||| Sbjct 4904 TCCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAAA 4845 Query 33313 TCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATT 33372 || || || || || || |||| ||| | ||||| || ||||| | ||| |||||| Sbjct 4844 TCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCATT 4785 Query 33373 AGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCT 33432 | ||||| ||||| | ||| || ||||| ||| || || ||||| ||||| || Sbjct 4784 AACCCACGTTTTTTCAACCAGAAAATGGAGCAGAAACTACCTGAGAAGAAAATTCCCTCA 4725 Query 33433 ACTGCAGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATGTATCCACTT 33488 || ||||| || | || | ||| | ||| | | ||| ||| |||||||| Sbjct 4724 ACACAGGCAAACGCCAAAATACGCTCGGC-GAACGATTCCGTGCTATCA---ATCCACTT 4669 Query 33489 TTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATA 33548 | |||||||| |||||||| || ||||| || | ||||| || ||| || | Sbjct 4668 TAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGGAACAACCG 4609 Query 33549 GtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATG 33608 || || || || || ||| | ||| || || | | |||||| ||||| || ||||| Sbjct 4608 ATTCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTGTACATCTCGGAATG 4549 Query 33609 AATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTC 33668 ||||| || ||||| || || ||||| |||||| |||||| || | || || ||||| Sbjct 4548 GATGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTCAGCAACTTGGACTTC 4489 Query 33669 TGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGC 33728 | | || ||| | || | ||| || || || || ||| || || || || || Sbjct 4488 TTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAGAAGGC 4429 Query 33729 CAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG----A 33784 | ||||| | || |||| ||| ||||| | |||| ||||| || || | Sbjct 4428 AAGGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTA-AGGATTCC---CAGTGGCGAA 4373 Query 33785 TATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACA 33844 |||| || | ||| ||||| || | ||||| || || || || || || || |||| Sbjct 4372 GGTCTTGTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTACA 4313 Query 33845 TGTTCCAGATGTCATAATATTGGATTGGGAAAAT 33878 | | |||||| | | ||| || |||||||| || Sbjct 4312 TCTCCCAGATTTGAGGATAATGAATTGGGAACAT 4279 >seq9269 Length=8543 Score = 89.7 bits (98), Expect = 6e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63612 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTG 63671 ||||| | ||||| | ||| |||||||| || |||||||| || ||| | | | | Sbjct 7582 GTTCCAGAGTTAAAAAGGGTGGGAGAAGCATGAGTAAACCAACGTTGAGACATTGTGTGG 7523 Query 63672 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63730 || || | |||||| || || ||||| | ||| ||||| || || || || | |||||| Sbjct 7522 TAAGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATTAA 7464 Query 63731 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63790 |||||| || || || ||||| | ||| | | || || | ||| || |||||| Sbjct 7463 CATGTGTTGGGGCCTCTCAACAACCTTCCCCTGAACCTTTAAGAGGTATGACCTTTCCAG 7404 Query 63791 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63838 ||||| || ||||| ||| || |||||| || || || || || Sbjct 7403 GGTTTTGAAGCCAAAGAAGTCATAATCAAAGTCACGGTCATATATGAT 7356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622633795263680