Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq22339 98.7 9e-16 seq21318 96.9 3e-15 seq18711 95.1 1e-14 seq3045 86.0 6e-12 >seq22339 Length=139203 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || || || | || || || | |||||| | || | || ||| Sbjct 90764 ATGCAAATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCT 90705 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 || |||||||| | || || ||||| ||||||||||| || || || ||||| Sbjct 90704 GATACCATCGACAACGTAAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCAG 90645 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAG-CGACTATAA 26947 ||| | ||||| | || ||| || |||||||| |||| | |||| | |||||| || Sbjct 90644 CAACGTCTCATCTTCGCCGGAAAGCAACTCGAGGATGGCCG-TACGTTGGCCGACTACAA 90586 Query 26948 CATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 ||| ||||| || |||||| |||| |||||||| Sbjct 90585 CATCCAAAAGGAGTCTACTCTCCACCTGGTCCT 90553 >seq21318 Length=12341 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAA 26827 |||||| | || || || ||||| || || || | ||||| | ||| ||||| Sbjct 4517 AATGCAGATTTTCGTGAAGACATTGACGGGCAAGACCATCACTCTGGAAGTAGAAAGCTC 4458 Query 26828 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCA 26887 |||||| ||||| | || || ||||||| ||||| || || || || || || || Sbjct 4457 CGACACTATCGACAATGTGAAGGCAAAGATTCAAGACAAGGAGGGAATCCCACCTGACCA 4398 Query 26888 ACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGC-GACTATA 26946 || || || || | | ||||||||||| ||||||| || ||| | ||| || || | Sbjct 4397 GCAGAGGCTGATCTTTGCAGGCAAACAACTTGAAGATGGCAG-AACTTTAGCTGATTACA 4339 Query 26947 ACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACT 26986 |||| ||||| ||||| ||| ||||| |||| || |||| Sbjct 4338 ACATCCAAAAGGAATCAACTCTCCATTTGGTGCTTCGACT 4299 >seq18711 Length=80062 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATT--AGAATCA 26825 ||||||| | ||||| || || ||||| |||||| | || || | ||| | ||| | Sbjct 40605 AATGCAAATTTTTGTGAAGACCTTAACCGGAAAAACAATTACTTTGGAAGTTGAGAGTTC 40664 Query 26826 AACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGAT 26885 | || || ||||| | || ||| ||||| || ||||||||||| || || || Sbjct 40665 A--GATACTATCGACAACGTTAAAGCTAAGATACAAGATAAAGAAGGGATCCCACCAGAC 40722 Query 26886 CAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTAT 26945 ||||| || | |||| || || || ||| | || |||| || | | ||||||| Sbjct 40723 CAACAGAGGTTAATTTTCGCTGGGAAGCAATTGGAGGATGGCAGGACTCTAGCCGACTAT 40782 Query 26946 AACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || |||||||| ||||| ||| |||| |||| ||| | ||| | ||||| Sbjct 40783 AATATTCAAAAGGAATCGACTCTCCACTTGGTGCTGCGTCTTCGTGGAGG 40832 Score = 87.8 bits (96), Expect = 2e-12 Identities = 162/234 (69%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 26768 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAA---TC 26824 ||||||| | ||||| ||||| | || || || | || || | || | ||| || Sbjct 40377 AATGCAAATTTTTGTCAAAACGCTTACGGGGAAGACTATTACACTAGAGGTTGAAAGCTC 40436 Query 26825 AAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGA 26884 | ||||| ||||| | |||||| |||||| ||||||||||| || || || || Sbjct 40437 A---GACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATTCCCCCGGA 40493 Query 26885 TCAACAAAGACTCATTTACGGCGGCAAACAACTCGAAGAT-GATAGAAACGTCAGCGACT 26943 || ||||| | || | || ||||| || ||||||||| || || || | ||||| Sbjct 40494 CCAGCAAAGGTTGATCTTCGCAGGCAAGCAGCTCGAAGATGGACGGACAC-TAGCCGACT 40552 Query 26944 ATAACATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGGAA 26997 | || |||||||| || || ||| | || || || ||| | ||| | || |||| Sbjct 40553 ACAATATTCAAAAGGAGTCCACTCTTCACCTTGTGCTGCGTCTTCGTGGTGGAA 40606 >seq3045 Length=115554 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 |||||| | || || ||||| | || || || | |||||| |||| | || || Sbjct 12178 ATGCAAATCTTCGTTAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTGGAGTCCTCT 12119 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 ||||||||||| | || || ||||| || || ||||| || || || ||||| Sbjct 12118 GACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCCCCGGATCAG 12059 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 ||| | | || | || |||||| ||||| || |||| ||| | |||||| ||| Sbjct 12058 CAACGTTTGATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTTGCCGACTACAAC 11999 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || |||||||| ||| | || || ||||| || ||| | || || Sbjct 11998 ATCCAGAAAGAATCAACTCTTCACCTCGTCCTAAGGCTTCGTGGTGG 11952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478421584946560