Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq21318 100 2e-16 seq22339 89.7 4e-13 seq18711 89.7 4e-13 seq31175 87.8 2e-12 seq26478 86.0 5e-12 seq3045 82.4 7e-11 >seq21318 Length=12341 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | ||||| ||||| || ||||| ||| | || ||| | ||||| ||| | Sbjct 4972 ATGCAGATTTTTGTGAAAACCTTGACTGGCAAAACAATCACCTTGGAAGTGGAGAGCTCA 4913 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || || || || | || ||| ||||| || || || ||||| || || || ||| Sbjct 4912 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGCATTCCACCTGACCAA 4853 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGC-GATTATAA 24169 ||||| |||||| | || ||||| || ||||| | ||| | | ||| |||||||| Sbjct 4852 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGACGGCAGGACTCT-AGCAGATTATAA 4794 Query 24170 CATTCAAAAAGAATCTACAATTCATTTAGTGTTAAGATTGAGAGGAGGA 24218 ||||||||| ||||| || | ||||| ||| | ||||| | || ||| Sbjct 4793 CATTCAAAAGGAATCGACGTTGCATTTGGTGCTTCGATTGCGTGGTGGA 4745 >seq22339 Length=139203 Score = 89.7 bits (98), Expect = 4e-13 Identities = 140/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| ||||||| || | || ||| | || || ||| | Sbjct 90992 ATGCAAATCTTCGTTAAAACCCTAACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCT 90933 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || |||||||| | ||||| ||||| ||||| ||||| || || || ||||| Sbjct 90932 GATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCAG 90873 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATTATAA 24169 || | || |||| || ||| ||||||||||| |||| | | |||| | ||| || || Sbjct 90872 CAACGTCTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCG-TACGTTGGCCGACTACAA 90814 Query 24170 CATTCAAAAAGAATCTAC 24187 ||| ||||| ||||| || Sbjct 90813 CATCCAAAAGGAATCAAC 90796 >seq18711 Length=80062 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 24084 GACAAAGAAGGCATACCTCCCGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAA 24143 || |||||||| || ||||| || || ||||| || |||| || || ||||| ||||| Sbjct 40015 GATAAAGAAGGAATTCCTCCAGACCAGCAGAGGCTTATTTTCGCTGGAAAGCAGCTCGAG 40074 Query 24144 GATGACAGAAACGTCAGCGATTATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 |||| ||| | || |||||||||||| ||||||||||| || | ||||| ||| Sbjct 40075 GATGGTCGAACCCTCGCCGATTATAACATACAAAAAGAATCAACCCTACATTTGGTG 40131 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 23990 AATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAA 24049 ||||||| | ||||| ||||| | || || || | ||||| | || || || | Sbjct 40377 AATGCAAATTTTTGTCAAAACGCTTACGGGGAAGACTATTACACTAGAGGTTGAAAGCTC 40436 Query 24050 CGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCA 24109 ||||| ||||| | |||||| |||||| ||||||||||| || || || || || Sbjct 40437 AGACACAATCGACAATGTCAAAGCTAAGATTCAAGACAAAGAAGGTATTCCCCCGGACCA 40496 Query 24110 ACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGAT-GACAGAAACGTCAGCGATTATA 24168 || || |||| | || |||||||| ||||||||| ||| || || | ||| || | Sbjct 40497 GCAAAGGTTGATCTTCGCAGGCAAGCAGCTCGAAGATGGACGGACAC-TAGCCGACTACA 40555 Query 24169 ACATTCAAAAAGAATCTACAATTCA 24193 | |||||||| || || || |||| Sbjct 40556 ATATTCAAAAGGAGTCCACTCTTCA 40580 >seq31175 Length=13598 Score = 87.8 bits (96), Expect = 2e-12 Identities = 142/202 (70%), Gaps = 2/202 (1%) Strand=Plus/Minus Query 23987 CAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGC 24046 ||| |||||| | || || ||||| ||||||| || | || ||| | || || ||| | Sbjct 7671 CAAGATGCAAATCTTCGTTAAAACCCTAACTGGCAAGACCATCACCCTTGAGGTTGAGTC 7612 Query 24047 CAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGA 24106 || |||||||| | ||||| ||||| ||||| ||||| || || || || Sbjct 7611 GTCTGATACCATCGACAACGTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGA 7552 Query 24107 TCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAG-CGATT 24165 ||| || || |||| || ||| ||||||||||| |||| | | |||| | ||| | Sbjct 7551 TCAGCAACTTCTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCG-TACGTTGGCCGACT 7493 Query 24166 ATAACATTCAAAAAGAATCTAC 24187 | ||||| ||||| ||||| || Sbjct 7492 ACAACATCCAAAAGGAATCAAC 7471 >seq26478 Length=75715 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || ||||| |||| || || | |||||| ||||||||||| | | Sbjct 13739 ATGCAGATCTTCGTGAAAACCCTAACGGGTAAGACCATTACCCTCGAAGTCGAGAGCTCC 13798 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 || ||||| || | ||||| |||||| ||||| || || || || ||||| || Sbjct 13799 GATACCATTGACAATGTCAAGGCAAAGATCCAGGACAAGGAGGGAATCCCCCCCGACCAG 13858 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | |||||| || ||| ||||| || || || | | ||| | | ||| || || Sbjct 13859 CAGCGTTTGATTTTCGCCGGAAAGCAGCTTGAGGACGGCCGAACCCTTGCCGACTACAAT 13918 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 13919 ATCCAGAAGGAATCCAC 13935 >seq3045 Length=115554 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || ||||| | || || || | || ||| |||| || ||| || Sbjct 12178 ATGCAAATCTTCGTTAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTGGAGTCCTCT 12119 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 ||||||||||| | || || ||||| || || ||||| || || || ||||| Sbjct 12118 GACACCATCGACAACGTTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCCCCGGATCAG 12059 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 || | |||| | || |||||||||||| || |||| | ||| | ||| || ||| Sbjct 12058 CAACGTTTGATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTTGCCGACTACAAC 11999 Query 24171 ATTCAAAAAGAATCTACAATTCA 24193 || || |||||||| || |||| Sbjct 11998 ATCCAGAAAGAATCAACTCTTCA 11976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429725106718440