Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq21318 105 5e-18 seq3045 98.7 8e-16 seq22339 93.3 3e-14 seq18711 82.4 6e-11 >seq21318 Length=12341 Score = 105 bits (116), Expect = 5e-18 Identities = 163/231 (71%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| ||| || || || |||||||| |||||||| || || Sbjct 4289 CCCCCCACGCAGTCGAAGCACCAAATGGAGAGTTGATTCCTTTTGGATGTTGTAATCAGC 4348 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| || | || || | ||||||||| ||| | || |||| ||| ||||| || Sbjct 4349 TAAAGTTCTGCCATCTTCAAGTTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGG 4408 Query 16828 CACGCCCTCTTTGTCGGCAAT--TTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | ||||| ||||| ||| |||| |||||| | | | | ||||||| | || Sbjct 4409 GATTCCCTCCTTGTCTTGAATCTTTGC--CTTCACATTGTCGATAGTGTCGGAGCTTTCT 4466 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 ||||| |||||||| || || |||| || || || |||||||||||| Sbjct 4467 ACTTCCAGAGTGATGGTCTTGCCCGTCAATGTCTTCACGAAAATCTGCATT 4517 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| ||||| ||| || |||||||| ||||| || || || | || || |||| Sbjct 4761 AGCACCAAATGCAACGTCGATTCCTTTTGAATGTTATAATCTGCTAGAGTCCTGCCGTCT 4820 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | || || || ||| |||| | || ||||||||| || | |||||| || || Sbjct 4821 TCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGTGGAATGCCCTCCTTATCT 4880 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || ||| ||||| | | | || || | |||| ||||| |||||| | Sbjct 4881 TGGATCTTAGCT--TTCACATTATCAATTGTATCTGAGCTCTCCACTTCCAAGGTGATTG 4938 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || |||| ||||| |||||||||||||| Sbjct 4939 TTTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 4972 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||| || || || |||||||| |||| || | |||||||||||| Sbjct 4086 TGGAGGGTGGACTCTTTCTGAATATTGTAGTCAGCCAAAGTCCGACCATCCTCCAATTGT 4145 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || ||| | || || | |||||| || || | ||||| ||||| ||| | | Sbjct 4146 TTTCCAGCAAAGATCAGTCTCTGTTGATCTGGTGGAATCCCCTCCTTGTCTTGAATCTTC 4205 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||| | || ||||| ||||| || ||||| ||| Sbjct 4206 GCCTTCACATTGTCGATTGTGTCTGAGCTTTCAACTTCCAATGTGATTGTCTTTCCTGTC 4265 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 ||||| || || ||||||||||| Sbjct 4266 AGCGTCTTCACGAAAATCTGCAT 4288 >seq3045 Length=115554 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || || | ||| || || |||||||| || |||||||| || || Sbjct 11268 CCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCTGCA 11327 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||||||||| || ||| | || || | ||||||||| || Sbjct 11328 AGAGTTCGGCCATCTTCCAATTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGGGGA 11387 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | || || ||||| ||| | |||||| | | | | ||||| | ||| Sbjct 11388 ATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACC 11447 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| |||||||| || ||||| |||||||| ||||| Sbjct 11448 TCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAAATTTGCAT 11494 >seq22339 Length=139203 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| || | || || ||||||||||| || |||||||| || || Sbjct 89854 CCACCACGAAGACGCAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCG 89913 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || | | ||||||| || || || || | || |||| ||| |||||| ||| Sbjct 89914 AGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGAGGG 89973 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||| || ||||| ||||| ||| || || | | | ||||| | |||| Sbjct 89974 ATGCCTTCCTTGTCCTGAATTTTAGCT--TTTACATTATCGATCGTGTCAGAGCTCTCCA 90031 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| |||||||||| ||||| || || |||||||| Sbjct 90032 CCTCCAAGGTGATGGTCTTTCCGGTCAAGGTTTTCACGAAGATCTGCAT 90080 >seq18711 Length=80062 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || |||||||||||||| |||||||| ||||||| || | |||||||| ||| Sbjct 41036 TGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAACTGT 40977 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || |||| | || || ||||| ||| | ||||| ||||| |||| Sbjct 40976 TTTCCAGCGAAAATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTA 40917 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | |||||| | ||| |||| || ||||| ||||| || Sbjct 40916 GCCTTCACGTTGTCAATAGTGTCTGAGCTCTCAACCTCCAATGTTATGGTCTTTCCTGTT 40857 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 | || || ||||| || ||||| Sbjct 40856 AAGGTCTTTACAAATATTTGCAT 40834 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 404889295221520