Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq29839 264 1e-65 seq9269 104 3e-17 >seq29839 Length=13537 Score = 264 bits (292), Expect = 1e-65 Identities = 588/875 (67%), Gaps = 18/875 (2%) Strand=Plus/Minus Query 32370 TTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCTTCTAATGATATATTT 32429 || || |||||||| || | ||| || || |||||||| || || | || || || Sbjct 5144 TTCTGATATTCACCGACTCTTTTCTCAAAGAAATTAGTCTTCCCCTGCAACGAAATCAAC 5085 Query 32430 TCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAATCCCAATTCAGAAATC 32489 ||||| |||| || ||||| ||||||||| ||||| | ||||||| | || | Sbjct 5084 TCCATCCAATCAAACGGATTTTGAACATTATAGATTTTGCCATATCCCAAGGCTCCAACC 5025 Query 32490 AATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCACAATTCATTCCTATAAGT 32549 || |||||||| ||||||||||| ||| |||||| || | ||||||||| | ||| Sbjct 5024 AACCTATCTGCCACAAATTCTATGTATTGGCTCATCAAGTCCCCATTCATTCCAACAAGA 4965 Query 32550 TTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAGACCGCGTCTGTTATAATA 32609 || || | ||| || | |||||| ||| ||| || || ||||||| ||| Sbjct 4964 GCCACCGGCAAAGCATCACACACAAATTCCCTTTCTATATCAACGGCCTCTGTTACAATC 4905 Query 32610 GATCTTACTGTTTCTTCACTCGGTGGATACAATAAATGTTTAAACATCAAACATGCGAAA 32669 || ||| || |||||| | | | || | | ||| |||||| || ||| Sbjct 4904 TCCCTCACTCGATCCTCACTCAATTTCTTCCTCAACAATGAATACAACAAACAAGCAAAA 4845 Query 32670 TCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATT 32729 || || || || || || |||| ||| || ||||| || ||||| | ||| |||||| Sbjct 4844 TCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCATT 4785 Query 32730 AGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTC 32788 | ||||| ||||| | ||| || ||||| ||| || || || ||||||||||| || Sbjct 4784 AACCCACGTTTTTTCAACCAGAAAATGGA-GCAGAAACTACCTGAGAAGAAAATTCCCTC 4726 Query 32789 TACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC----CGGCGCTGTCATGTATCCACT 32844 || ||||| || | || | ||| | ||| | | ||| ||| ||||||| Sbjct 4725 AACACAGGCAAACGCCAAAATACGCTCGGC-GAACGATTCCGTGCTATCA---ATCCACT 4670 Query 32845 TTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGAT 32904 || |||||||| |||||||| || ||||| || | || || |||||| || | Sbjct 4669 TTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGGAACAACC 4610 Query 32905 AGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAAT 32964 || || || || || ||| | ||| || |||| | |||||| ||||| || |||| Sbjct 4609 GATTCTTCTCGTTTGAATTTTTGATATAGGTTTCAAGGAGAAGACTGTACATCTCGGAAT 4550 Query 32965 GAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTT 33024 | ||||| || ||||| ||||| ||||| ||||| |||||| || | || || |||| Sbjct 4549 GGATGTTCTCGATGGCAATTTGGAATCCATAGAAAGCTCTAGCTTCAGCAACTTGGACTT 4490 Query 33025 CTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACG 33084 || | || ||| | || | ||| || || || || ||| || || || || | Sbjct 4489 CTTTCATGAACCGTCCGGCGAGATTCTCCAAAACGATGCCATCAGAAGCAGCGAAGAAGG 4430 Query 33085 CCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTG---- 33140 | | ||||| | || |||| ||| ||||| | |||| ||||| || || Sbjct 4429 CAAGGACATGAGTGATGAAATGTTTCTCGTCAGAAGTTA-AGGATTCC---CAGTGGCGA 4374 Query 33141 ATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATAC 33200 | |||| || | ||| ||||| || | ||||| || || || || || || || ||| Sbjct 4373 AGGTCTTGTGAGAGATCGACTTCCTCGGCAGTCCAGAAGGAGGCTTCGGCTTTCTTGTAC 4314 Query 33201 ATATTCCAGATGTCATGATATTGAATTGGAAAAAT 33235 || | |||||| | | |||| |||||||| || || Sbjct 4313 ATCTCCCAGATTTGAGGATAATGAATTGGGAACAT 4279 >seq9269 Length=8543 Score = 104 bits (114), Expect = 3e-17 Identities = 156/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 63227 CCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCA 63286 ||||| ||||| | |||| ||| || | ||| |||| | || ||| || | ||| ||| Sbjct 7940 CCTCCTTGATCAACATATCGAGCAGTATCATTGAAAACCCGCAGCATAGGCACAATCCCA 7881 Query 63287 TTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGAT 63346 || ||||| ||||| || || ||||| || || ||||||| ||||| || || Sbjct 7880 TTAGATGTCCCATTTGTTCCACGAATATAACTGCCCATGGCACGGATATTGTGGATGGAA 7821 Query 63347 AGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATG 63406 | ||| || || || || || || | || ||| |||||| |||||||| || Sbjct 7820 ACACCAATACCACCAGCTGACTTGCTAATAACAGCACATTCTTTTAAGGTATCATATATT 7761 Query 63407 CCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTA 63448 || ||||||||||||||| ||||| | || ||||||||| Sbjct 7760 CCTTCTATACTATCATCCTTCATGCATACAAGGAAACAGCTA 7719 Score = 93.3 bits (102), Expect = 5e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| | ||||| | ||| |||||||| ||||||||||| || ||| | | | | Sbjct 7582 GTTCCAGAGTTAAAAAGGGTGGGAGAAGCATGAGTAAACCAACGTTGAGACATTGTGTGG 7523 Query 63527 TACGTCTCAATAGCTGAGTCTATATCC-CATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | |||||| || || ||||| | ||| ||||| || || || || | |||||| Sbjct 7522 TAAGTTTTAATAGCAGAATCAATATCATCCTTG-TGAATACCAACAGCAACCCTCATTAA 7464 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| || || || ||||| | ||| | | || || | ||| || |||||| Sbjct 7463 CATGTGTTGGGGCCTCTCAACAACCTTCCCCTGAACCTTTAAGAGGTATGACCTTTCCAG 7404 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| || ||||| ||| || |||||| || || || || || Sbjct 7403 GGTTTTGAAGCCAAAGAAGTCATAATCAAAGTCACGGTCATATATGAT 7356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633313219740800