Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq8682 205 1e-47 seq7398 179 4e-40 seq16876 154 2e-32 seq1209 149 7e-31 seq3977 89.7 6e-13 >seq8682 Length=13014 Score = 205 bits (226), Expect = 1e-47 Identities = 196/251 (78%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 166747 ATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAAC 166806 ||||| |||||||||||||| || || || ||||||||||||| || ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 166807 TCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTTACTGCT 166866 ||||| || | || |||||||| || || |||||||| || ||||| ||||| || ||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 166867 CTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATC 166926 | ||| ||||||| ||||| |||||| | || |||||||| |||||||| || | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 166927 GATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGGTCTGGGT 166986 ||| |||| |||||||| | || || ||||| ||| | | ||||||||| ||| ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 166987 ATGGAAGTAAT 166997 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq7398 Length=4807 Score = 179 bits (198), Expect = 4e-40 Identities = 212/287 (74%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 167942 GCAAACACTTTCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACT 168001 ||||| || ||| | || ||| | | ||||| | || ||||||||||| ||||||||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 168002 GCTAACCGATTCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCAC 168061 || ||||| || ||||| |||| ||||| ||||||| |||||| |||||||| || Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 168062 TTCTTTATGCTTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGT 168121 ||||||||| | || || || || | || | |||| ||| || |||| | | ||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 168122 CTCGCACTTAATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGAT 168181 | | |||| || ||||| |||||||| || ||||||||| || | | ||| || ||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 168182 CCAGAGTTTGAAACTTTCTATACGAAAAACATCCTCCTCAATGAAGG 168228 || | ||||| ||||||||||| ||||| || ||| | || |||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGG 2480 >seq16876 Length=31318 Score = 154 bits (170), Expect = 2e-32 Identities = 197/270 (73%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 166778 TGATCTTCCAATACGCT--TCCTTCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGC 166835 || |||||||||| ||| | ||||||||||| || || | || || ||||| || || Sbjct 28055 TGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGC 28114 Query 166836 ATGGCCTGTTGTCGGTATCTGGTTTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCT 166895 |||||||| | |||| ||| || ||| | ||| ||||||| ||||| |||||| | Sbjct 28115 TTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTT 28170 Query 166896 CAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCTCAACACTTG 166955 || ||| || |||||||| | | | ||| |||| |||| ||| | | || || Sbjct 28171 AAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTG 28230 Query 166956 GGCAGATGTCCTCAACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCA 167015 | ||||| | | |||| |||| ||| |||| |||||| ||||| || |||||||| || Sbjct 28231 GCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCA 28290 Query 167016 CAACTTCCCTCTGGATCTTGCTGCTGCTGA 167045 ||||||||||| || || ||| ||| ||| Sbjct 28291 AAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq1209 Length=37697 Score = 149 bits (164), Expect = 7e-31 Identities = 175/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 166681 GAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACC 166740 || |||| |||| ||| ||| || | ||||| | || |||||||| ||||| || Sbjct 32472 GAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTCGGTCAAGAGGAAGAAACT 32531 Query 166741 TACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCT--TCCT 166798 | | ||||| |||||||||||||| || || || ||||||||||||| ||| | | Sbjct 32532 TCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTT 32591 Query 166799 TCAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGT 166858 |||||||||||| || | || ||||||| || || ||||||| || ||||||||| Sbjct 32592 TCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGT 32651 Query 166859 TTACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAAC 166914 | || ||| | ||| ||||||| ||| | |||||| | || |||| || |||||| Sbjct 32652 TCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGAATGGTTGAAATTTCAAC 32707 >seq3977 Length=13071 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 166969 AACCGTGCTGGTCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTG 167028 ||||||||| ||| ||||||||||| ||||| || ||||||||||||||||||||||| Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 167029 GATCTTGCTGCT 167040 || || |||||| Sbjct 75 GACCTAGCTGCT 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566946625580800