Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq18711 113 4e-20 seq21318 98.7 8e-16 seq3045 98.7 8e-16 >seq18711 Length=80062 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || || ||||| | ||||||||||| || ||| | || ||| Sbjct 39922 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTTGAAAGTTCT 39981 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | | ||||| |||||| || |||||||| |||| || || Sbjct 39982 GATACTATTGACAATGTAAAGGCCAAAATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 40041 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || |||||||||| || || || || | || ||| | ||| | ||||||||||| Sbjct 40042 CAGAGGCTTATTTTCGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 40101 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||||||||||||| || |||||||| ||| | ||| | |||||||| Sbjct 40102 ATACAAAAAGAATCAACCCTACATTTGGTGCTCCGTTTACGCGGTGG 40148 >seq21318 Length=12341 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||| || | ||||| | || |||||||| || ||| | || |||| | Sbjct 5428 ATGCAAATCTTCATAAAAACCCTTACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 5369 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | | ||||| ||| ||| || ||||| ||| |||| ||| ||| Sbjct 5368 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 5309 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || |||||||| | ||| || || ||| | || ||| ||| | |||||||| ||| Sbjct 5308 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGAACGCTTGCCGATTACAAT 5249 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || ||||||||||| ||||||||| | | || || ||||| Sbjct 5248 ATCCAGAAGGAATCTACACTCCATTTAGTGCTTAGACTTCGTGGTGG 5202 >seq3045 Length=115554 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 |||||||||||||| ||||| | ||||| || ||||| ||| |||| || | Sbjct 11494 ATGCAAATTTTTGTGAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTCA 11435 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 || | ||| | | || || || ||| ||||| ||||| ||||| || ||| Sbjct 11434 GACACAATTGACAACGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 11375 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || || || || | ||| || ||||||||||||||| |||| | || ||||| || Sbjct 11374 CAGAGACTCATCTTTGCTGGGAAACAATTGGAAGATGGCCGAACTCTTGCAGATTACAAC 11315 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || ||||| || ||| | || |||||||| || ||||| Sbjct 11314 ATCCAGAAGGAGTCTACTCTCCATCTTGTCTTGCGTCTCCGTGGTGG 11268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422832489361600