Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq21318 120 2e-22 seq3045 104 2e-17 seq18711 93.3 3e-14 >seq21318 Length=12341 Score = 120 bits (132), Expect = 2e-22 Identities = 149/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| || || ||||| | || |||||||| || ||| | || |||| | || Sbjct 5428 ATGCAAATCTTCATAAAAACCCTTACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 5369 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||| ||| ||||||||||| | || ||||| Sbjct 5368 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 5309 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| |||||||||||||| || ||||| || ||| ||| | |||||||||||| Sbjct 5308 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGAACGCTTGCCGATTACAAT 5249 Query 22014 ATTCAGAAGGAATCTACTCTTCAT 22037 || |||||||||||||| || ||| Sbjct 5248 ATCCAGAAGGAATCTACACTCCAT 5225 Score = 111 bits (122), Expect = 1e-19 Identities = 153/213 (72%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || || | || ||||| |||||||| ||||| || ||||| ||| | | Sbjct 4517 AATGCAGATTTTCGTGAAGACATTGACGGGCAAGACCATCACTCTGGAAGTAGAAAGCTC 4458 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGT---ACCTGTAAA 21949 || || | | | || | ||| ||| ||| || || ||||| | ||||| | Sbjct 4457 CGACACTATCGACAATGTGAAGGCAAAGATTCAAGACAAGGAGGGAATCCCACCTG---A 4401 Query 21950 CCAACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTA 22009 ||| ||||| || |||||||| ||||||||||| |||||| | |||| | || ||||| Sbjct 4400 CCAGCAGAGGCTGATCTTTGCAGGCAAACAACTTGAAGATGGCAGAACTTTAGCTGATTA 4341 Query 22010 CAATATTCAGAAGGAATCTACTCTTCATATGGT 22042 ||| || || |||||||| ||||| ||| |||| Sbjct 4340 CAACATCCAAAAGGAATCAACTCTCCATTTGGT 4308 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||||||| | || || | || |||||||||||||| | || |||| | Sbjct 5200 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTGGAAAGTTCT 5141 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || | ||| ||||| || || |||||| | ||| | ||| Sbjct 5140 GATACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAGGGTATCCCTCCTGATCAA 5081 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| || |||||||| || || || || || |||| | || || |||||| Sbjct 5080 CAGAGACTGATTTTTGCTGGTAAGCAGCTTGAGGACGGTCGAACTCTTGCTGACTACAAT 5021 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGT 22042 || |||||||||||||| || ||| |||| Sbjct 5020 ATCCAGAAGGAATCTACCCTGCATTTGGT 4992 >seq3045 Length=115554 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | || || || ||||| ||| |||| || | || Sbjct 11494 ATGCAAATTTTTGTGAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTCA 11435 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | | | ||| || ||| || || || ||| | || | ||||| Sbjct 11434 GACACAATTGACAACGTGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCAA 11375 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||| ||||||||||| |||||| | |||||| |||| | || |||||||| Sbjct 11374 CAGAGACTCATCTTTGCTGGGAAACAATTGGAAGATGGCCGAACTCTTGCAGATTACAAC 11315 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || |||||||| |||||||| ||| | || || ||| | || || || Sbjct 11314 ATCCAGAAGGAGTCTACTCTCCATCTTGTCTTGCGTCTCCGTGGTGG 11268 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 |||||| || ||| |||| || | ||||| || ||||| || |||| ||| | Sbjct 11039 AATGCAGATCTTTGTTAAGACCCTGACGGGGAAGACCATCACTTTGGAGGTGGAGAGTTC 10980 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | | || | ||| ||||||| || || ||||| | ||| |||| Sbjct 10979 TGATACAATCGACAATGTGAAGGCAAAAATTCAGGACAAGGAGGGAATTCCTCCGGACCA 10920 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 ||||| | ||||||||||| || |||||||||||| || || | || |||||||| Sbjct 10919 GCAGAGGTTGATCTTTGCTGGAAAGCAACTAGAAGATGGAAGGACCCTTGCTGATTACAA 10860 Query 22013 TATTCAGAAGGAATCTACTCTTCA 22036 ||||||||||| ||||| ||||| Sbjct 10859 CATTCAGAAGGAGTCTACCCTTCA 10836 >seq18711 Length=80062 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 21833 AATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGC 21892 ||||||||| || | ||||| | || || |||||||| ||| | || |||| | | Sbjct 40149 AATGCAAATCTTCGTGAAAACCCTCACCGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 40208 Query 21893 AGAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCA 21952 || || | | || | ||| || || |||||||||||| | || |||| Sbjct 40209 CGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATCCCCCCGGACCA 40268 Query 21953 ACAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAA 22012 |||||||| ||||| ||||| |||||||| |||||| ||| |||| || ||||| Sbjct 40269 GCAGAGACTAATCTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACAA 40328 Query 22013 TATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGGA 22061 |||||||||||||| || | ||| | || | ||| | || || ||| Sbjct 40329 CATTCAGAAGGAATCAACATTGCATTTAGTGCTCCGTCTTCGTGGTGGA 40377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357949131727792