Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq3045 132 4e-26 seq18711 118 9e-22 seq22339 114 1e-20 seq21318 107 2e-18 seq8166 96.9 3e-15 >seq3045 Length=115554 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || | ||| | ||||| || || || ||||||||||| Sbjct 11265 ATACCACCACGGAGACGCAAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCT 11324 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| || |||||| | |||||| ||||| ||||||| | ||||||||| || Sbjct 11325 GCAAGAGTTCGGCCATCTTCCAATTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGG 11384 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | |||| ||||| | || || Sbjct 11385 GGAATACCTTCCTTGTCTTGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCA 11444 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || |||| ||| | || || ||||| |||||||| |||||||| |||||| Sbjct 11445 ACCTCCAAGGTGATGGTCTTTCCGGTGAGAGTTTTCACAAAAATTTGCATG 11495 >seq18711 Length=80062 Score = 118 bits (130), Expect = 9e-22 Identities = 164/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | |||||||| | || ||||| || ||||||||||| || Sbjct 40379 ATTCCACCACGAAGACGGAGCACTAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCC 40320 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||| || |||||||||||||||||||||| |||| || | ||| |||||||| Sbjct 40319 GCCAAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAGATTAGTCTCTGCTGGTCCGGG 40260 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || ||||| || ||||| || | | || | ||| |||| | ||| Sbjct 40259 GGGATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCGGAGCTTTCC 40200 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| ||||| || ||||| || || || ||||| Sbjct 40199 ACCTCTAAGGTGATGGTTTTACCGGTGAGGGTTTTCACGAAGATTTGCAT 40150 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || ||||||| || ||||||||||| ||||| |||||| | || ||| ||| || Sbjct 40130 ACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCGAGGGTTCGACCATCCTCG 40071 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || |||||| | || || | ||| ||||| |||||||| |||||||| || | Sbjct 40070 AGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGAATTCCTTCTTTATCCTGA 40011 Query 114294 ATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTG 114353 || || |||| | |||| || || | ||| || || | ||| | |||||| Sbjct 40010 ATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACCTCAAGGGTTATTGTTTTG 39951 Query 114354 CCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||||| |||||||| || || || ||||| Sbjct 39950 CCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 82.4 bits (90), Expect = 6e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | || || | || | || || || |||||||| ||||| ||| Sbjct 40607 ATTCCACCACGAAGACGCAGCACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCG 40548 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||| || || || || ||| |||| | | || |||||||| Sbjct 40547 GCTAGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCGAAGATCAACCTTTGCTGGTCCGGG 40488 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| |||||| ||| | | || | ||||| | | ||| Sbjct 40487 GGAATACCTTCTTTGTCTTGAATCTTAGCTTTGACATTGTCGATTGTGTCTGAGCTTTCA 40428 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || || || || || ||||| |||||||| ||||| Sbjct 40427 ACCTCTAGTGTAATAGTCTTCCCCGTAAGCGTTTTGACAAAAATTTGCAT 40378 >seq22339 Length=139203 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | | || | || | ||||| || ||||| |||||||| ||| Sbjct 90535 ATACCACCACGAAGACGGAGGACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCG 90594 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| ||| || ||||| || || ||| |||||||||| || || || || Sbjct 90595 GCCAACGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAGATGAGACGTTGCTGATCTGGG 90654 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||||| |||| | || | ||| || | || ||| Sbjct 90655 GGAATTCCTTCTTTGTCCTGGATCTTGGCCTTTACGTTGTCGATGGTATCAGATGACTCG 90714 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | ||| | || ||||||||||| || || || ||||| |||||| Sbjct 90715 ACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTGACGAAAATTTGCATG 90765 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | ||| || | || | || || || || || ||||||||||| Sbjct 90307 ATACCACCACGAAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCA 90366 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | |||||| ||||| | ||| || || ||| ||||||| | |||||||| || Sbjct 90367 GCAAGGGTACGACCGTCTTCTAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGG 90426 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| ||||| |||||| || | | || | ||| || | |||||| Sbjct 90427 GGAATTCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTATCGATGGTATCAGAGGATTCA 90486 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | ||||| |||||||| || || || ||||||||||| Sbjct 90487 ACCTCGAGGGTGATGGTTTTACCGGTCAGGGTCTTAACGAAAATCTGCAT 90536 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/232 (69%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 114151 AAATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAAT 114210 ||| ||| ||||| || | || || | || | || || || || ||||||||||||| Sbjct 89849 AAAAACCACCACGAAGACGCAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAAT 89908 Query 114211 CGCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCG 114270 | | ||| | ||| || || || || || ||| |||| || | ||| ||||||| Sbjct 89909 CAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCCG 89968 Query 114271 GAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATT 114330 |||| |||||||| ||||| ||| || ||||| | || | ||||| | | | Sbjct 89969 GAGGGATGCCTTCCTTGTCCTGAATTTTAGCTTTTACATTATCGATCGTGTCAGAGCTCT 90028 Query 114331 CGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || |||| ||| | || || ||||||| ||||| || || |||||||| Sbjct 90029 CCACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTTTTCACGAAGATCTGCAT 90080 >seq21318 Length=12341 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 || || ||||| |||| | || ||||| | || ||||| ||||| ||||||||||| Sbjct 4287 ATCCCCCCACGCAGTCGAAGCACCAAATGGAGAGTTGATTCCTTTTGGATGTTGTAATCA 4346 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | ||| | ||||||||||||||| || || |||| || | ||| ||||| || Sbjct 4347 GCT-AAAGTTCTGCCATCTTCAAGTTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGG 4405 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 || || || || ||||| ||||||| || | | || | ||||||| | ||| Sbjct 4406 TGGGATTCCCTCCTTGTCTTGAATCTTTGCCTTCACATTGTCGATAGTGTCGGAGCTTTC 4465 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || ||||| |||| || || || ||||||||||| Sbjct 4466 TACTTCCAGAGTGATGGTCTTGCCCGTCAATGTCTTCACGAAAATCTGCAT 4516 Score = 107 bits (118), Expect = 2e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATC- 114211 || || ||||| | || | || ||||| | ||| ||||| ||||||||||| ||||| Sbjct 4743 ATTCCACCACGCAATCGAAGCACCAAATGCAACGTCGATTCCTTTTGAATGTTATAATCT 4802 Query 114212 GCTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGG 114271 ||| | ||| | |||||||| || |||||||| | || | | ||||||||| || Sbjct 4803 GCT-AGAGTCCTGCCGTCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGG 4861 Query 114272 AGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTC 114331 |||||||| || || || ||||| ||| | | |||| || || | | || Sbjct 4862 TGGAATGCCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCTGAGCTCTC 4921 Query 114332 GACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | |||||||| |||| ||||| |||||||||||||| Sbjct 4922 CACTTCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 4972 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || ||||| ||||| ||||| || || ||| ||| ||| || | |||||| ||| Sbjct 4092 GTGGACTCTTTCTGAATATTGTAGTCAGCCAAAGTCCGACCATCCTCCAATTGTTTTCCA 4151 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || |||| || | |||||| || || ||||| || || ||||| |||||| || Sbjct 4152 GCAAAGATCAGTCTCTGTTGATCTGGTGGAATCCCCTCCTTGTCTTGAATCTTCGCCTTC 4211 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | | ||| || |||| || | || || || ||||| || Sbjct 4212 ACATTGTCGATTGTGTCTGAGCTTTCAACTTCCAATGTGATTGTCTTTCCTGTCAGCGTC 4271 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 4272 TTCACGAAAATCTGCAT 4288 >seq8166 Length=147256 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || || || || | ||| | ||| || || || || |||||||| ||| Sbjct 120220 ACCACCACGGAGCCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGC 120279 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 | || ||| ||| || || || ||||| ||| | ||||||||||| |||||||| || Sbjct 120280 AAGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGG 120339 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 || || || ||||| ||||||| || | | || | ||| || | ||||| Sbjct 120340 TATTCCCTCCTTGTCCTGAATCTTTGCCTTAACATTATCGATGGTATCAGAACTCTCGAC 120399 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | || || ||||| || ||||| || || |||||||| Sbjct 120400 CTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 120447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419928314623776