Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq3045 150 4e-31 seq22339 143 6e-29 seq21318 118 2e-21 seq18711 111 4e-19 seq8166 105 2e-17 seq35964 93.3 1e-13 >seq3045 Length=115554 Score = 150 bits (166), Expect = 4e-31 Identities = 176/235 (75%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || ||||| || | || ||| || |||||||| |||| Sbjct 11720 CATG-CCACCACGGAGCCGGAGCACGAGGTGGAGAGTTGATTCCTTCTGGATATTGTAGT 11778 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || || || ||||| || | ||| ||||| |||||||| ||||| || || | Sbjct 11779 CGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAGATGAGACGTTGCTGG---T 11835 Query 288362 CTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 | ||| |||||||| || |||||||| || ||||| ||||| || || | ||| | Sbjct 11836 CGGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTTACGTTGTCAATGGTGTCGGAGG 11895 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || ||||| ||||| ||||||||||| || || |||||||| || ||||| Sbjct 11896 ACTCCACCTCGAGGGTGATTGTCTTCCCGGTAAGGGTTTTGACGAAGATTTGCAT 11950 Score = 147 bits (162), Expect = 5e-30 Identities = 175/235 (74%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||||||||| | || || ||||||| ||| ||| || || || || || | Sbjct 11492 CATG-CCACCGCGGAGACGGAGGACAAGATGAAGAGTGGATTCCTTCTGAATGTTGTAAT 11550 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || || || || ||||| || || ||||| || || |||| | ||| || | Sbjct 11551 CGGCAAGGGTTCGCCCATCTTCCAACTGCTTTCCGGCAAATATCAATCTCTGCTG---GT 11607 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || ||||| ||||| ||||||||||| || || |||||||| || |||| ||| || Sbjct 11608 CTGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTATCAATAGTGTCGGACG 11667 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || || || || ||||| ||||| ||||| || ||||||||||| || ||||| Sbjct 11668 ACTCCACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACGAAGATTTGCAT 11722 Score = 136 bits (150), Expect = 9e-27 Identities = 170/232 (73%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| || || || || ||||| |||| || |||||| ||||| || |||| Sbjct 11948 CATG-CCACCACGAAGCCTTAGGACGAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGT 12006 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 |||| || || || || || || | ||| || || |||||||||| ||| || ||| Sbjct 12007 CGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAAACGTTGCTGATCCG 12066 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||||||||| ||||||||||| || || || ||||| || || | || || | Sbjct 12067 GGGGGATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGACT 12126 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | || ||||| ||||| ||||| || || || || || ||||| || ||||| Sbjct 12127 CCACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTAACGAAGATTTGCAT 12178 >seq22339 Length=139203 Score = 143 bits (158), Expect = 6e-29 Identities = 149/194 (77%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || |||||||| || |||||||| | ||| || || || || | ||| ||||| |||||| Sbjct 90574 TCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAG 90633 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || ||||| || ||| |||||| ||||||||||| |||||||| || || || ||| Sbjct 90634 ATGAGACGTTGCTGA---TCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTTACG 90690 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| || || || || || ||||| ||||| |||||||| |||||| Sbjct 90691 TTGTCGATGGTATCAGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTG 90750 Query 288460 ACGAATATCTGCAT 288473 ||||| || ||||| Sbjct 90751 ACGAAAATTTGCAT 90764 Score = 134 bits (148), Expect = 3e-26 Identities = 147/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || || || || || |||||||||||||| || || |||||| Sbjct 90346 TCCTTCTGGATGTTGTAATCAGCAAGGGTACGACCGTCTTCTAATTGCTTCCCGGCGAAG 90405 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 || || | ||||| |||||| |||||||| || |||||||| || || || ||| Sbjct 90406 ATGAGTCTTTGTTG---GTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTTGCCTTGACG 90462 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | ||| ||||| || ||||| ||||| || || |||||||| ||||| Sbjct 90463 TTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCGGTCAGGGTCTTA 90522 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 90523 ACGAAAATCTGCAT 90536 Score = 104 bits (114), Expect = 6e-17 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| |||||||| || | || | ||| ||||| | || ||||| |||||| Sbjct 90118 TCCTTCTGGATGTTATAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCAGCGAAG 90177 Query 288343 ATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTT 288402 |||| | ||| || ||||||||| || || || ||||| || || || ||||| Sbjct 90178 ATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTGGATCTTAGCCTTAACGTTG 90237 Query 288403 TCTATAGAATCG---CTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || | || ||| || || || || ||||| ||||| ||||||| |||||| Sbjct 90238 TCAATGGTGTCCGAACTC---TCAACCTCTAGGGTGATGGTCTTGCCGGTCAATGTCTTG 90294 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 90295 ACGAAAATCTGCAT 90308 Score = 100 bits (110), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| |||| ||| || || || || || || || ||| Sbjct 89854 CCACCACGAAGACGCAGGACGAGGTGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCG 89913 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || | ||| || || | || || |||||||||||||| | ||| || ||| Sbjct 89914 AGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGAGGG 89973 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || ||||| || ||||| ||||| ||||| || || || || | || |||| || Sbjct 89974 ATGCCTTCCTTGTCCTGAATTTTAGCTTTTACATTATCGATCGTGTCAGAGCTC---TCC 90030 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||||| || || ||||| |||||||| Sbjct 90031 ACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTTTTCACGAAGATCTGCAT 90080 >seq21318 Length=12341 Score = 118 bits (130), Expect = 2e-21 Identities = 165/230 (72%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || || || | ||| ||||| || ||||| ||||| || Sbjct 4062 CCACCGCGCAGGCGGAGGACAAGGTGGAGGGTGGACTCTTTCTGAATATTGTAGTCAGCC 4121 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || || || || || ||||||||||| || |||||||| | ||||||| ||| Sbjct 4122 AAAGTCCGACCATCCTCCAATTGTTTTCCAGCAAAGATCAGTCTCTGTTGATCTGGTGGA 4181 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGATTCT 288423 || || || || || || || ||||| ||||| || || || | || ||| ||| Sbjct 4182 ATCCCCTCCTTGTCTTGAATCTTCGCCTTCACATTGTCGATTGTGTCTGAGCT---TTCA 4238 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| | ||||| ||||| || ||||| ||||| ||||| |||||||| Sbjct 4239 ACTTCCAATGTGATTGTCTTTCCTGTCAGCGTCTTCACGAAAATCTGCAT 4288 >seq18711 Length=80062 Score = 111 bits (122), Expect = 4e-19 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 ||||||||| | | || || | ||| | || ||||||||| || ||||| ||||| Sbjct 40149 TCCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGC 40090 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 ||| || || || || || | || ||||| ||||| || || | ||| || ||||| Sbjct 40089 GAGGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGG---TCTGG 40033 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTC 288422 ||||||||||||||||| ||||| || || || || || |||| ||| ||| Sbjct 40032 AGGAATTCCTTCTTTATCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTC 39973 Query 288423 TACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || || || || ||||| ||||| || ||||| || ||||| Sbjct 39972 AACCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 104 bits (114), Expect = 6e-17 Identities = 141/195 (72%), Gaps = 4/195 (2%) Strand=Plus/Minus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| ||||| |||||||||||||| || || | || || || ||||| || || ||||| Sbjct 40797 TTCCTTTTGAATATTATAGTCGGCTAGAGTCCTGCCATCCTCCAATTGCTTCCCAGCGAA 40738 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 || | | |||||| |||||| ||||||||||| || || || ||||| ||||| Sbjct 40737 AATTAACCTCTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGTATCTTAGCTTTAACGTT 40678 Query 288402 TTCTATAGAATCGCTCGATTCT--ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || |||| || || | ||| ||||| | || || || || ||||| | ||||| Sbjct 40677 GTCGATAGTAT--CTGAACTCTCAACTTCCAAAGTAATTGTTTTTCCGGTTAAGGTCTTC 40620 Query 288460 ACGAATATCTGCATT 288474 || || || |||||| Sbjct 40619 ACAAAAATTTGCATT 40605 Score = 102 bits (112), Expect = 2e-16 Identities = 167/235 (71%), Gaps = 12/235 (5%) Strand=Plus/Minus Query 288246 TCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGC 288305 |||||| || || | || || || |||| ||| || ||||| ||||| |||||||| Sbjct 40605 TCCACCACGAAGACGCAGCACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCGGC 40546 Query 288306 GAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGG 288365 || || ||||| ||||| | || || ||||||||||||| || || ||| || || Sbjct 40545 TAGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCGAAGATCA-AC-CT-TTGCTGGTCCGG 40489 Query 288366 G---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGA 288419 | || |||||||| || || || || ||||| || || || || | || ||| Sbjct 40488 GGGAATACCTTCTTTGTCTTGAATCTTAGCTTTGACATTGTCGATTGTGTCTGAGCT--- 40432 Query 288420 TTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATT 288474 ||| || || || || || |||||||| || || || ||||| || || |||||| Sbjct 40431 TTCAACCTCTAGTGTAATAGTCTTCCCCGTAAGCGTTTTGACAAAAATTTGCATT 40377 Score = 93.3 bits (102), Expect = 1e-13 Identities = 162/233 (70%), Gaps = 12/233 (5%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || || | ||| || ||||| || || || ||||| Sbjct 41060 CCACCACGAAGGCGAAGGACAAGGTGGAGGGTGGACTCCTTTTGAATGTTGTAATCGGCC 41001 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGAC---GCTGTTGAGAATCT 288363 | || ||||| || || || |||||||| ||||| |||| | |||| | | | Sbjct 41000 AATGTACGTCCATCCTCCAACTGTTTTCCAGCGAAAATCAACCTTTGCTGGTCGGGA--- 40944 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATC---GCTCGAT 288420 ||||| || || || ||||||||||| || |||||||| || |||| || |||| Sbjct 40943 GGGATACCCTCCTTGTCCTGGATTTTAGCCTTCACGTTGTCAATAGTGTCTGAGCTC--- 40887 Query 288421 TCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || | || || ||||| || || | ||||| || ||||| ||||| Sbjct 40886 TCAACCTCCAATGTTATGGTCTTTCCTGTTAAGGTCTTTACAAATATTTGCAT 40834 >seq8166 Length=147256 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| || | || ||||| | |||| || || ||||| || |||||||| Sbjct 120221 CCACCACGGAGCCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCA 120280 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || ||||| || |||||||| || || Sbjct 120281 AGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGCGGT 120340 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCG---CTCGATTCT 288423 ||||| || || ||||| || || || || || || || || | ||| ||| || Sbjct 120341 ATTCCCTCCTTGTCCTGAATCTTTGCCTTAACATTATCGATGGTATCAGAACTC---TCG 120397 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || ||||| || || ||||||||||| || || || ||||| |||||||| Sbjct 120398 ACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 120447 >seq35964 Length=12301 Score = 93.3 bits (102), Expect = 1e-13 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 288370 CCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACTTCG 288429 ||||| ||||||||||| || ||||| || || || || | |||||| || || ||||| Sbjct 4275 CCTTCCTTATCCTGGATCTTAGCTTTAACATTGTCGATGGTATCGCTGGACTCAACTTCC 4334 Query 288430 AGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 | ||| ||||||||||| || || || || ||||| |||||||| Sbjct 4335 AACGTAATCGTCTTCCCCGTTAGGGTTTTCACGAAGATCTGCAT 4378 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179046078768144