Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq29839 102 1e-16 seq360 96.9 4e-15 >seq29839 Length=13537 Score = 102 bits (112), Expect = 1e-16 Identities = 150/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Minus Query 126059 TGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCC 126118 || || || || || || || || | || || ||||| | ||| ||||| | || Sbjct 4838 TGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCATTAACCCA 4779 Query 126119 CGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACAC 126178 || || |||||||||||||| | || || ||| |||||||| |||||||| ||||| Sbjct 4778 CGTTTTTTCAACCAGAAAATGGAGCAGAAACTACCTGAGAAGAAAATTCCCTCAACACAG 4719 Query 126179 GCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCC 126238 || ||||| || | |||||| || || || || | | |||| |||||| | |||| Sbjct 4718 GCAAACGCCAAAATACGCTCGGCGAACGATTCCG---TGCTATCAATCCACTTTAACGCC 4662 Query 126239 CACTGCGCCTTTTTCTCGATACACGGGACGGT 126270 || | ||||| |||| || ||| ||||| || Sbjct 4661 CAATCAGCCTTCTTCTTGACACAGGGGACAGT 4630 >seq360 Length=27789 Score = 96.9 bits (106), Expect = 4e-15 Identities = 189/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||||||||| || |||||||| ||||| || | ||||||||| | Sbjct 8696 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCACC 8755 Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 | ||| || | | || | || || || ||||| ||||| ||||| || || || Sbjct 8756 ACCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAACACAATGCA 8815 Query 10996 CGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 || | ||| || ||| || || | || || ||||| ||||| ||||| | Sbjct 8816 AGG-AGCTTTGGACTTGGCTTTGTCGAACAAGTCCCGCACTCTTGAAGCACCCACACCAA 8874 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114 |||||| ||| ||||| | | ||| | ||| || ||| || || | |||||| | Sbjct 8875 CAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCTTCACCGG 8934 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | | ||| ||||| || || || || || || ||||| Sbjct 8935 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCAGG 8971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597053071403840