Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq21318 107 2e-18 seq3045 105 7e-18 seq22339 100 3e-16 seq18711 98.7 1e-15 seq26478 96.9 4e-15 seq31175 84.2 2e-11 >seq21318 Length=12341 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 42000 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 42059 |||||||||| || ||||| || |||||||| ||||| ||||| || |||| || Sbjct 4992 ACCAAATGCAGGGTAGATTCCTTCTGGATATTGTAGTCAGCAAGAGTTCGACCGTCCTCA 5051 Query 42060 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATG 42119 |||||||||||||| || || |||| ||| || || | || | | ||||||||| | Sbjct 5052 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGAGGGATACCCTCCTTGTCTTGG 5111 Query 42120 ATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTG 42179 ||||| |||| | | | || || |||||| || | || ||||||||| Sbjct 5112 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 5171 Query 42180 CCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || || || ||||| ||||| |||||||| Sbjct 5172 CCAGTAAGGGTCTTCACAAATATTTGCAT 5200 Score = 98.7 bits (108), Expect = 1e-15 Identities = 155/221 (70%), Gaps = 6/221 (3%) Strand=Plus/Plus Query 41991 AAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGC 42050 || || | |||||||||||| || ||||||||||| || ||||| || ||||||| Sbjct 4755 AATCGAAGCACCAAATGCAACGTCGATTCCTTTTGAATGTTATAATCTGCTAGAGTCCTG 4814 Query 42051 TCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCC 42110 |||| || |||||||||||||| || || | | ||| ||||| | ||| | || |||| Sbjct 4815 CCGTCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGTGGAATGCCCTCC 4874 Query 42111 TTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACC 42167 || || ||| || ||| | | | | || || |||| ||||| || | Sbjct 4875 TTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCTGAGCTC---TCCACTTCCAAG 4931 Query 42168 GTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||| |||||||| || | || || ||||| || ||||| Sbjct 4932 GTGATTGTTTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 4972 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/214 (71%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 41999 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 42058 ||| ||||| | ||| ||||| || ||||||||||| || || || || | || || Sbjct 5219 CACTAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCAAGCGTTCGGCCATCCTC 5278 Query 42059 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCAT 42118 || ||||||||||| || || || | ||| ||||||| ||| | || ||| || | | | Sbjct 5279 AAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGAATGCCCTCTTTAT-CTT 5337 Query 42119 GATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGG 42174 || | |||| || | | | | ||||| ||| |||||| |||| ||||| | Sbjct 5338 GAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCT---TTCCACCTCGAGGGTGATTG 5394 Query 42175 TTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 ||||||| || || || |||| ||||||||||| Sbjct 5395 TTTTGCCAGTAAGGGTTTTTATGAAGATTTGCAT 5428 >seq3045 Length=115554 Score = 105 bits (116), Expect = 7e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || |||||||| || || || || || |||| || || ||||| |||||||| Sbjct 11760 TCCTTCTGGATATTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 11819 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || |||||||||| || | | ||||||||| ||| || ||| | ||| Sbjct 11820 ATGAGACGTTGCTGGTCGGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTTA-CGTT 11878 Query 42138 GCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | || | ||||| || ||||| |||| ||||| || || || || || || || || Sbjct 11879 GTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATTGTCTTCCCGGTAAGGGTTTTGAC 11938 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 11939 GAAGATTTGCAT 11950 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| ||||| |||||||| || || || ||| | || || | |||||| || || ||| Sbjct 11532 TCCTTCTGAATGTTGTAATCGGCAAGGGTTCGCCCATCTTCCAACTGCTTTCCGGCAAAT 11591 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 || | || ||||||||| | || | | ||||| ||| ||| || || | | Sbjct 11592 ATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTA 11651 Query 42138 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 42197 | | |||||| ||| ||||| || | |||||||| || || || || ||||| || Sbjct 11652 TCAATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACG 11711 Query 42198 AAGATTTGCAT 42208 ||||||||||| Sbjct 11712 AAGATTTGCAT 11722 >seq22339 Length=139203 Score = 100 bits (110), Expect = 3e-16 Identities = 142/196 (72%), Gaps = 8/196 (4%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| ||||| ||||||||||| ||||||| | || || |||||||| || ||||| Sbjct 89889 CTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGCTTCCCTGCGAA 89948 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 42135 || || | ||||||||| | || | || ||||||||| ||| |||| | ||| | Sbjct 89949 GATCAGCCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCC-TGAATTTTAGCTTTTACAT 90007 Query 42136 TCGCCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | |||||| |||| ||||| || | |||||||| || || || | || | Sbjct 90008 TATCGATCGTGTCAGAGCTC---TCCACCTCCAAGGTGATGGTCTTTCCGGTCAAGGTTT 90064 Query 42193 TTACAAAGATTTGCAT 42208 | || ||||| ||||| Sbjct 90065 TCACGAAGATCTGCAT 90080 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||||||| | || | || |||||| || || ||||||||||| || || || | Sbjct 90321 ACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGACC 90380 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| |||| ||||| || ||||| ||||||| || ||||| | || | | ||||| Sbjct 90381 GTCTTCTAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCTTCCTT 90440 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 |||| ||| ||| |||| | | | || || ||||| || |||| ||||| Sbjct 90441 GTCCTGGATCTTTGCCTTGACGTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGAT 90500 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||||| || || || ||||| || || || ||||| Sbjct 90501 GGTTTTACCGGTCAGGGTCTTAACGAAAATCTGCAT 90536 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| || |||| || || | || || || ||||| || ||||| Sbjct 90802 TCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAA 90861 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| || ||||| || | || | | ||||||||| ||| || |||| ||| Sbjct 90862 ATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 90920 Query 42138 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || ||| || || || | |||||||| ||||| ||||| || || || Sbjct 90921 GTCGATGGTATCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTTTTAAC 90980 Query 42197 AAAGATTTGCAT 42208 ||||||||||| Sbjct 90981 GAAGATTTGCAT 90992 >seq18711 Length=80062 Score = 98.7 bits (108), Expect = 1e-15 Identities = 152/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||| | ||| ||||||||||| ||||| ||||| ||||| || |||| |||||| | Sbjct 40365 ACGGAGCACTAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCCGCCAAAGTCCGGCC 40306 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || || || ||||||||||| || |||| ||||||||| | || | | ||| || Sbjct 40305 ATCTTCAAGTTGTTTACCAGCGAAGATTAGTCTCTGCTGGTCCGGGGGGATACCCTCTTT 40246 Query 42113 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 42172 || ||| || || | | | | || ||| |||||| || | ||||| Sbjct 40245 ATCTTGGATCTTAGCCTTCACATTATCGATGGTATCGGAGCTTTCCACCTCTAAGGTGAT 40186 Query 42173 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 |||||| || || || || || || |||||||||||| Sbjct 40185 GGTTTTACCGGTGAGGGTTTTCACGAAGATTTGCATT 40149 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 8/196 (4%) Strand=Plus/Minus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||||||||| |||||||| |||| || || | || || | ||| || |||||||| Sbjct 41025 CTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAACTGTTTTCCAGCGAA 40966 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 42136 || | | |||||||||| || | | |||||||||| |||||| || | ||| Sbjct 40965 AATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTAGCCTTCA-CGT 40907 Query 42137 CG-CCACCGTGTC---GCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCT 42192 | | | ||||| |||| || || || | || ||||| || || |||| |||| Sbjct 40906 TGTCAATAGTGTCTGAGCTC---TCAACCTCCAATGTTATGGTCTTTCCTGTTAAGGTCT 40850 Query 42193 TTACAAAGATTTGCAT 42208 ||||||| |||||||| Sbjct 40849 TTACAAATATTTGCAT 40834 Score = 82.4 bits (90), Expect = 8e-11 Identities = 153/221 (69%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| ||| | || | ||| |||||||||||||||||| || || || ||||| | Sbjct 40593 ACGCAGCACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCGGCTAGTGTCCGTCC 40534 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 || || |||||||| || ||||| || | | |||||||| | || | | || || Sbjct 40533 ATCTTCGAGCTGCTTGCCTGCGAAGATCAACCTTTGCTGGTCCGGGGGAATACCTTCTTT 40474 Query 42113 GTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCGACCG 42168 || | ||| | || | ||||| | | | ||||| ||| ||| || || | | Sbjct 40473 GT-CTTGAATCTTAGCTTTGACATTGTCGATTGTGTCTGAGCT---TTCAACCTCTAGTG 40418 Query 42169 TGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 42209 | || || || ||||| ||||| || ||||| ||||||||| Sbjct 40417 TAATAGTCTTCCCCGTAAGCGTTTTGACAAAAATTTGCATT 40377 >seq26478 Length=75715 Score = 96.9 bits (106), Expect = 4e-15 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 41982 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 42041 ||||| || | ||| | ||| | || | ||| ||||| || |||||||| || || Sbjct 13965 CCTCCCCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGGATATTGTAGTCGGCA 13906 Query 42042 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGC 42101 || || || |||| || |||||||| || ||||| || | ||||||||||||| || Sbjct 13905 AGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGGGGG 13846 Query 42102 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTC---GCTCGATTCC 42158 | | |||||||||| ||| ||| |||| | | | || || |||| || Sbjct 13845 ATTCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCGGAGCTC---TCG 13789 Query 42159 ACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 || |||| || ||||| || |||||||| || || || ||||| ||||| Sbjct 13788 ACTTCGAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 13739 >seq31175 Length=13598 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 |||||||| || ||||| || |||| || || | || || || ||||| || ||||| Sbjct 7477 TCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAA 7536 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTC 42137 ||||| | ||||| || | || | | ||||||||| ||| || |||| ||| Sbjct 7537 ATGAGAAGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 7595 Query 42138 GCC-ACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | || || ||| || || || | |||||||| ||||| ||||| || || || Sbjct 7596 GTCGATGGTATCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTTTTAAC 7655 Query 42197 AAAGATTTGCATTTT 42211 ||||||||||| || Sbjct 7656 GAAGATTTGCATCTT 7670 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 542939509640320