Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq22339 104 2e-17 seq18711 98.7 1e-15 seq3045 98.7 1e-15 seq31175 87.8 2e-12 seq8166 87.8 2e-12 >seq22339 Length=139203 Score = 104 bits (114), Expect = 2e-17 Identities = 140/195 (72%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| |||||||||||| || ||||| ||||||||||| || |||| Sbjct 90571 GACTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCGAGTTGCTTTCCGGCG 90630 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| ||||| || || || || || || ||||||||||| ||| || |||| Sbjct 90631 AAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTTACG 90690 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | ||| || | ||||| ||||| | || | || || || ||||| || || Sbjct 90691 TTGTCGATGGTATCAGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGGGTCTTG 90750 Query 138601 ACAAAAATCTGCATG 138615 || ||||| |||||| Sbjct 90751 ACGAAAATTTGCATG 90765 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| |||||||| |||||||||||| || ||||| ||||||||||| || |||| Sbjct 90797 TTGATTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCGAGTTGCTTTCCGG 90856 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | || ||||| || || || || || || ||||| ||||| ||| || || | Sbjct 90857 CGAAAATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA 90916 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||| || | |||||| ||||| | || | || || ||||| || |||| Sbjct 90917 CGTTGTCGATGGTATCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTTT 90976 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 90977 TAACGAAGATTTGCAT 90992 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | |||||| || | || | | | |||||||| || |||||||| || Sbjct 90310 CCACCACGAAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCA 90369 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||||| ||| || | ||| || |||| |||| || | |||||||| || || Sbjct 90370 AGGGTACGACCGTCTTCTAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGGGGA 90429 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| ||||| ||| ||| || | | || | ||| || | || || ||| Sbjct 90430 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTATCGATGGTATCAGAGGATTCAACC 90489 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| || | |||||||| ||||| || || || ||||||||||| Sbjct 90490 TCGAGGGTGATGGTTTTACCGGTCAGGGTCTTAACGAAAATCTGCAT 90536 >seq18711 Length=80062 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | |||||||| | |||| ||||| |||||||||||||| | Sbjct 40376 CCACCACGAAGACGGAGCACTAAATGCAATGTTGATTCCTTCTGAATGTTGTAGTCCGCC 40317 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || || || ||||||||||| | ||||||| | ||| |||||||| || Sbjct 40316 AAAGTCCGGCCATCTTCAAGTTGTTTACCAGCGAAGATTAGTCTCTGCTGGTCCGGGGGG 40257 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 ||||| ||||| || ||| || || | | || | ||| |||| |||||| Sbjct 40256 ATACCCTCTTTATCTTGGATCTTAGCCTTCACATTATCGATGGTATCGGAGCTTTCCACC 40197 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || || ||||| || || || ||||| Sbjct 40196 TCTAAGGTGATGGTTTTACCGGTGAGGGTTTTCACGAAGATTTGCAT 40150 >seq3045 Length=115554 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| ||||| || || ||||||||| | || || |||||| ||||| || || | Sbjct 11755 TTGATTCCTTCTGGATATTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAG 11814 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| ||||| || ||||| || || || ||||| ||||| ||| || ||||| Sbjct 11815 CGAAGATGAGACGTTGCTGGTCGGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTTA 11874 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | |||||||| ||||||||||||| || | || || || || || |||| Sbjct 11875 CGTTGTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATTGTCTTCCCGGTAAGGGTTT 11934 Query 138599 TTACAAAAATCTGCATG 138615 | || || || |||||| Sbjct 11935 TGACGAAGATTTGCATG 11951 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/198 (71%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||||||||| |||||||||||||| | ||| | ||||| || || || |||| Sbjct 11071 TTGACTCCTTCTGAATGTTGTAGTCAGCAAGAGTCCTTCCATCCTCAAGCTGCTTTCCGG 11130 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | |||| | | ||| ||||| || || || ||||| || || ||| |||| | ||| Sbjct 11131 CAAAGATCAACCTCTGCTGGTCTGGGGGGATGCCTTCCTTATC-CTGAATTTTCGCCTTA 11189 Query 138539 --ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 |||| || | ||| |||| ||| ||||| | || | ||||| ||||||| ||| Sbjct 11190 ACATTG-TCGATGGTATCGGAACTCTCGACCTCAAGGGTGATGGTTTTTCCAGTCAAAGT 11248 Query 138597 TTTTACAAAAATCTGCAT 138614 || || || |||||||| Sbjct 11249 CTTAACGAAGATCTGCAT 11266 Score = 82.4 bits (90), Expect = 8e-11 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| || || || |||||||||||| | ||| || ||||| ||||| || |||| Sbjct 11983 TTGATTCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGG 12042 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 |||| | ||| || || ||||| || || ||||| || || || | || | ||| Sbjct 12043 CGAAGATCAAACGTTGCTGATCCGGGGGGATTCCTTCCTTATC-CTGGATCTTGGCCTTA 12101 Query 138539 A--TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 | ||| || | |||||| | ||||||||||||| || | || || || || || || Sbjct 12102 ACGTTG-TCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCTGTGAGGGT 12160 Query 138597 TTTTACAAAAATCTGCAT 138614 ||| || || || ||||| Sbjct 12161 TTTAACGAAGATTTGCAT 12178 >seq31175 Length=13598 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/196 (70%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 138419 TTGACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGG 138478 |||| |||||||| |||||||||||| || ||||| ||||||||||| || |||| Sbjct 7472 TTGATTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCGAGTTGCTTTCCGG 7531 Query 138479 AATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTA 138538 | || ||| | || || || || || || ||||| ||||| ||| || || | Sbjct 7532 CGAAAATGAGAAGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA 7591 Query 138539 ATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 138598 | || | ||| || | |||||| ||||| | || | || || ||||| || |||| Sbjct 7592 CGTTGTCGATGGTATCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTTT 7651 Query 138599 TTACAAAAATCTGCAT 138614 | || || || ||||| Sbjct 7652 TAACGAAGATTTGCAT 7667 >seq8166 Length=147256 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/195 (71%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || |||||||||||| | || || ||||| || || ||||||| Sbjct 120254 GACTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCAGCTGCTTACCGGCG 120313 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 | || |||||||| |||||||| ||||| || || ||||| ||| | |||| |||| Sbjct 120314 AAAATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTC-CTGAATCTTTGCCTTAAC 120372 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| || | ||| ||||||| || | || || || || || ||||| Sbjct 120373 ATTATCGATGGTATCAGAACTCTCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTT 120432 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 120433 CACGAAGATCTGCAT 120447 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496012730386560