Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq18711 122 6e-23 seq3045 107 1e-18 seq21318 105 5e-18 seq22339 93.3 3e-14 seq26478 86.0 4e-12 >seq18711 Length=80062 Score = 122 bits (134), Expect = 6e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009 ||||| || || | | || ||||| ||||| || |||||||||||||| |||||| | Sbjct 40148 CCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 40089 Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069 || ||| | || || | || || |||||| | || | | ||| ||||| ||| Sbjct 40088 AGGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGA 40029 Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129 |||||||| || || ||||||| |||||| | || |||||||| | |||| || Sbjct 40028 ATTCCTTCTTTATCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAACC 39969 Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || | ||| || ||||| || || |||||||| || || |||||||| Sbjct 39968 TCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || || || || || ||||| || || || ||| ||| | || | || || Sbjct 40814 ACCAAGTGGAGAGTCGATTCCTTTTGAATATTATAGTCGGCTAGAGTCCTGCCATCCTCC 40755 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 ||||| || |||||| | || || | ||||||||| ||| || ||||| || || Sbjct 40754 AATTGCTTCCCAGCGAAAATTAACCTCTGTTGGTCTGGTGGGATCCCTTCTTTATCTTGT 40695 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 || || ||| || | || |||||||| | | || || || || ||||| ||||| Sbjct 40694 ATCTTAGCTTTAACGTTGTCGATAGTATCTGAACTCTCAACTTCCAAAGTAATTGTTTTT 40635 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || | || || |||||||||||||| Sbjct 40634 CCGGTTAAGGTCTTCACAAAAATTTGCAT 40606 Score = 82.4 bits (90), Expect = 5e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||| || || || ||||| || ||||| ||| || | | | ||||| | || Sbjct 40580 TGAAGAGTGGACTCCTTTTGAATATTGTAGTCGGCTAGTGTCCGTCCATCTTCGAGCTGC 40521 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 ||||| ||| | ||||| | || ||||| ||||| ||||| ||||| ||| || Sbjct 40520 TTGCCTGCGAAGATCAACCTTTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGAATCTTA 40461 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||| ||| | || || || || |||| || |||| ||||| || || || || Sbjct 40460 GCTTTGACATTGTCGATTGTGTCTGAGCTTTCAACCTCTAGTGTAATAGTCTTCCCCGTA 40401 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || ||||| |||||||||||||| Sbjct 40400 AGCGTTTTGACAAAAATTTGCAT 40378 >seq3045 Length=115554 Score = 107 bits (118), Expect = 1e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 14965 AAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCT 15024 || || | ||| || ||||| || || || ||||||||||| ||| ||| | ||| Sbjct 11283 AAGACAAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCTGCAAGAGTTCGGCCATCT 11342 Query 15025 TCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCA 15084 || |||||||| ||||| | || | | ||||||||| ||||| ||||||||||| Sbjct 11343 TCCAATTGTTTCCCAGCAAAGATGAGTCTCTGTTGGTCTGGGGGAATACCTTCCTTGTCT 11402 Query 15085 CAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTT 15144 ||| ||| || || | || || || || | || || || ||||| ||||| Sbjct 11403 TGAATCTTGGCCTTCACGTTGTCAATTGTGTCTGAAGACTCAACCTCCAAGGTGATGGTC 11462 Query 15145 TTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || |||||||| |||||||||||||| Sbjct 11463 TTTCCGGTGAGAGTTTTCACAAAAATTTGCAT 11494 Score = 105 bits (116), Expect = 5e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 ||||||||||| || || || ||||||||||| || | || | ||||||| ||| Sbjct 10836 TGAAGGGTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCTAGTTGC 10895 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || ||||| | ||||| | ||| ||||| |||||||| |||||||| |||||| Sbjct 10896 TTTCCAGCAAAGATCAACCTCTGCTGGTCCGGAGGAATTCCCTCCTTGTCCTGAATTTTT 10955 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 || ||| | || || ||||| | | || || || || || ||||| || || ||| Sbjct 10956 GCCTTCACATTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCCGTC 11015 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| || ||||| Sbjct 11016 AGGGTCTTAACAAAGATCTGCAT 11038 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||| || | |||| || | ||||| || || ||||| || |||||||| ||| Sbjct 11950 TGCCACCACGAAGCCTTAGGACGAGGTGAAGAGTTGATTCTTTCTGGATGTTGTAGTCGG 12009 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 ||| ||| | || || | ||| ||||| ||| | |||||||| || || || | Sbjct 12010 CAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAGATCAAACGTTGCTGATCCGGGG 12069 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||||||||| || || ||| || || | || || || || || | Sbjct 12070 GGATTCCTTCCTTATCCTGGATCTTGGCCTTAACGTTGTCGATGGTGTCAGAGGACTCCA 12129 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||| ||||| || ||||| || ||||| || || |||||||| Sbjct 12130 CCTCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTAACGAAGATTTGCAT 12178 >seq21318 Length=12341 Score = 105 bits (116), Expect = 5e-18 Identities = 164/229 (72%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATC-GCT 15008 || || |||| || | || ||||| || || || || ||||| ||||||||||| ||| Sbjct 4290 CCCCCACGCAGTCGAAGCACCAAATGGAGAGTTGATTCCTTTTGGATGTTGTAATCAGCT 4349 Query 15009 GAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGG 15068 | | |||| | ||||| | ||||||||| || | |||| | ||| ||||| ||| Sbjct 4350 -AAAGTTCTGCCATCTTCAAGTTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGG 4408 Query 15069 AATTCCTTCCTTGTCACAAAT-TTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 ||||| |||||||| ||| ||||| || ||| | || ||||| ||| |||||| Sbjct 4409 GATTCCCTCCTTGTCTTGAATCTTTGC-CTTCACATTGTCGATAGTGTCGGAGCTTTCTA 4467 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | || ||||| || || |||| || || || ||||| ||||| Sbjct 4468 CTTCCAGAGTGATGGTCTTGCCCGTCAATGTCTTCACGAAAATCTGCAT 4516 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| ||||| |||||||| || || || || ||||| || ||| ||| |||| || Sbjct 4991 AACCAAATGCAGGGTAGATTCCTTCTGGATATTGTAGTCAGCAAGAGTTCGACCGTCCTC 5050 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 | || || ||||| | |||| | |||||| || || || || |||||||| Sbjct 5051 AAGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGAGGGATACCCTCCTTGTCTTG 5110 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 ||||| || ||| | || || ||||| | |||| || || | ||||||||||| Sbjct 5111 GATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTT 5170 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || ||||| |||||||| Sbjct 5171 GCCAGTAAGGGTCTTCACAAATATTTGCAT 5200 >seq22339 Length=139203 Score = 93.3 bits (102), Expect = 3e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || || || || ||||||||||| || | | ||||||||||||| Sbjct 90334 TGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGACCGTCTTCTAATTGC 90393 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || || ||| | || | | |||||||| ||||||||||||||||| || ||| Sbjct 90394 TTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCTTCCTTGTCCTGGATCTTT 90453 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || || | || || ||||| ||| || || | ||| ||||||||||| || Sbjct 90454 GC-CTTGACGTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGATGGTTTTACCGGT 90512 Query 15153 CAGAGTTTTTACAAAAATTTGCATA 15177 ||| || || || ||||| |||||| Sbjct 90513 CAGGGTCTTAACGAAAATCTGCATA 90537 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 |||||||| || || || || ||||||||||| |||| | || | || || | || Sbjct 89878 TGAAGGGTGGACTCCTTCTGAATGTTGTAATCAGCGAGAGTCCTTCCATCCTCCAGCTGC 89937 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTG 15093 || || ||| | |||| | ||| ||||| || || ||||||||||| |||||| Sbjct 89938 TTCCCTGCGAAGATCAGCCTCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGAATTTTA 89997 Query 15094 CTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTC 15153 ||||||| | || || || || | || || || ||||| ||||| || || ||| Sbjct 89998 GCTTTTACATTATCGATCGTGTCAGAGCTCTCCACCTCCAAGGTGATGGTCTTTCCGGTC 90057 Query 15154 AGAGTTTTTACAAAAATTTGCAT 15176 | ||||| || || || ||||| Sbjct 90058 AAGGTTTTCACGAAGATCTGCAT 90080 >seq26478 Length=75715 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || || || || || || || || ||||| ||| || ||| |||| || | || Sbjct 13941 TGGAGCGTGGATTCCTTCTGGATATTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGCTGC 13882 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 || || ||| | ||||||||||| |||||| || ||||| |||||||| || ||| Sbjct 13881 TTTCCGGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTT 13822 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || ||| | || || |||||| | || || || | ||||||||| ||||| || Sbjct 13821 GC-CTTGACATTGTCAATGGTATCGGAGCTCTCGACTTCGAGGGTAATGGTCTTACCCGT 13763 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 || ||||| || || || ||||| Sbjct 13762 TAGGGTTTTCACGAAGATCTGCAT 13739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357216691182680