Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq18711 127 2e-24 seq26478 116 4e-21 seq22339 116 4e-21 seq8166 113 4e-20 seq3045 111 1e-19 seq21318 109 5e-19 >seq18711 Length=80062 Score = 127 bits (140), Expect = 2e-24 Identities = 165/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||||||||| || | ||||||||||| || || |||||||| || || |||||| | Sbjct 40149 TCCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGC 40090 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || ||| ||| || ||||| ||||||||| | || | | |||||| || ||||| Sbjct 40089 GAGGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGG 40030 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || || || || ||| ||||| ||| | | || | || || | ||| || || Sbjct 40029 AATTCCTTCTTTATCCTGAATTTTGGCCTTTACATTGTCAATAGTATCAGAACTTTCAAC 39970 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | ||||||||||| |||||||| || || || ||||| Sbjct 39969 CTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 Score = 116 bits (128), Expect = 4e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| |||||||| ||||||||| ||| || || ||| || | |||||||||| Sbjct 41030 GTGGACTCCTTTTGAATGTTGTAATCGGCCAATGTACGTCCATCCTCCAACTGTTTTCCA 40971 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| | ||||| | ||||| |||||||| || |||||||||||| |||||| ||| Sbjct 40970 GCGAAAATCAACCTTTGCTGGTCGGGAGGGATACCCTCCTTGTCCTGGATTTTAGCCTTC 40911 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | ||||| | ||||| || || | || | || || || || | || Sbjct 40910 ACGTTG-TCAATAGTGTCTGAGCTCTCAACCTCCAATGTTATGGTCTTTCCTGTTAAGGT 40852 Query 127096 TTTTACAAAAATCTGCAT 127113 |||||||| || ||||| Sbjct 40851 CTTTACAAATATTTGCAT 40834 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | |||| ||| | || | || ||||| |||||||||||||| ||| | Sbjct 40605 TCCACCACGAAGACGCAGCACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCGGC 40546 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || || ||| || ||||| || || ||| ||||||| | ||||| || || || Sbjct 40545 TAGTGTCCGTCCATCTTCGAGCTGCTTGCCTGCGAAGATCAACCTTTGCTGGTCCGGGGG 40486 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGC-TTGAGTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || || |||| | ||| | | || |||| | |||| ||||| | || || | Sbjct 40485 AATACCTTCTTTGT-CTTGAATCTTAGCTTTGACATTGTCGATTGTGTCTGAGCTTTCAA 40427 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | || || || || || ||||| |||||||| ||||| Sbjct 40426 CCTCTAGTGTAATAGTCTTCCCCGTAAGCGTTTTGACAAAAATTTGCAT 40378 >seq26478 Length=75715 Score = 116 bits (128), Expect = 4e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Minus Query 126916 CGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCC 126975 ||| || || || || |||||||| ||| | | || || || || ||||| ||||| Sbjct 13936 CGTGGATTCCTTCTGGATATTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGCTGCTTTCC 13877 Query 126976 AGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTT 127035 ||| | ||||| |||||||| ||||| || || |||||||||||| ||| || ||| Sbjct 13876 GGCGAAAATCAAACGCTGCTGGTCGGGGGGGATTCCCTCCTTGTCCTGGATCTTTGCCTT 13817 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 || | || | ||| || | ||||||||||||| ||| | || || || || || || Sbjct 13816 GACATTGTCAATGGTATCGGAGCTCTCGACTTCGAGGGTAATGGTCTTACCCGTTAGGGT 13757 Query 127096 TTTTACAAAAATCTGCATG 127114 ||| || || ||||||||| Sbjct 13756 TTTCACGAAGATCTGCATG 13738 >seq22339 Length=139203 Score = 116 bits (128), Expect = 4e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 |||||| || | || ||||| || || || || || || ||| || | ||| || Sbjct 90099 CACCAAGTGCAAGGTTGACTCCTTCTGGATGTTATAGTCAGCCAAAGTCCTTCCATCTTC 90158 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| ||||||||| ||||||| | |||||| || || || || ||||||||||| Sbjct 90159 CAGCTGCTTTCCAGCGAAGATCAACCTCTGCTGGTCTGGTGGGATTCCCTCCTTGTCTTG 90218 Query 127024 GATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTT 127082 ||| || ||| | |||| || | |||||||| |||||| || || | ||| | || | Sbjct 90219 GATCTTAGCCTTAACGTTG-TCAATGGTGTCCGAACTCTCAACCTCTAGGGTGATGGTCT 90277 Query 127083 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||||| || || || ||||||||||| Sbjct 90278 TGCCGGTCAATGTCTTGACGAAAATCTGCAT 90308 Score = 109 bits (120), Expect = 5e-19 Identities = 145/199 (73%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| ||||| || ||||| ||| ||| ||| || ||| || || || ||||| Sbjct 90568 GTAGACTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCGAGTTGCTTTCCG 90627 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | || |||||||| || || || || || |||||| ||| || ||| Sbjct 90628 GCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGGATCTTGGCCTTT 90687 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | ||||| ||| ||| || | |||||| || | ||| | || ||||||||||| || Sbjct 90688 ACGTTGT-CGATGGTATCAGATGACTCGACCTCAAGGGTGATGGTCTTGCCGGTCAGGGT 90746 Query 127096 TTTTACAAAAATCTGCATG 127114 || || ||||| |||||| Sbjct 90747 CTTGACGAAAATTTGCATG 90765 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||||||| | || | || ||||| || || || |||||||| | Sbjct 90310 CCACCACGAAGACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCA 90369 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || ||| || |||| || || || ||| |||| | || || || || || || Sbjct 90370 AGGGTACGACCGTCTTCTAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGGGGA 90429 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| ||| || ||||| | |||| ||| || | || || Sbjct 90430 ATTCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTATCGATGGTATCAGAGGATTCAACC 90489 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | ||||| |||||||| || || || ||||||||||| Sbjct 90490 TCGAGGGTGATGGTTTTACCGGTCAGGGTCTTAACGAAAATCTGCAT 90536 >seq8166 Length=147256 Score = 113 bits (124), Expect = 4e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | | || || | ||| | ||| ||||| || || || ||||| ||| Sbjct 120218 GCACCACCACGGAGCCTTAAGACAAGATGGAGCGTGGACTCCTTCTGGATGTTGTAGTCG 120277 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | | || ||| ||| || ||||| || || ||| | || | |||||||| || || Sbjct 120278 GCAAGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAAAATGAGACGCTGCTGGTCCGGC 120337 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 ||||| |||||||||||| ||| | | || ||| | | |||| ||| || | |||||| Sbjct 120338 GGTATTCCCTCCTTGTCC-TGAATCTTTGCCTTAACATTATCGATGGTATCAGAACTCTC 120396 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| |||| || | || || ||||| || ||||| || || |||||||| Sbjct 120397 GACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTTCACGAAGATCTGCAT 120447 >seq3045 Length=115554 Score = 111 bits (122), Expect = 1e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || ||||| |||||||| | | || | ||| ||||| || |||||| Sbjct 10842 GTAGACTCCTTCTGAATGTTGTAATCAGCAAGGGTCCTTCCATCTTCTAGTTGCTTTCCA 10901 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTG-CTT 127035 || ||||||| | |||||| || ||||| || |||||||||||| ||| ||| || ||| Sbjct 10902 GCAAAGATCAACCTCTGCTGGTCCGGAGGAATTCCCTCCTTGTCC-TGAATTTTTGCCTT 10960 Query 127036 GAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | | |||| || || | |||||| || || | || | || || || ||||| || Sbjct 10961 CACATTGTCGATTGTATCAGAACTCTCCACCTCCAAAGTGATGGTCTTCCCCGTCAGGGT 11020 Query 127096 TTTTACAAAAATCTGCAT 127113 || ||||| |||||||| Sbjct 11021 CTTAACAAAGATCTGCAT 11038 >seq21318 Length=12341 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || ||||| | ||||||||| | ||| || || |||||||| || ||||| | Sbjct 4745 TCCACCACGCAATCGAAGCACCAAATGCAACGTCGATTCCTTTTGAATGTTATAATCTGC 4804 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | || | || || ||||| || ||||| | ||||| | ||| || || || || Sbjct 4805 TAGAGTCCTGCCGTCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGTGG 4864 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 ||||||||||| || ||| || || | | || | || || | ||||| || Sbjct 4865 AATGCCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCTGAGCTCTCCAC 4924 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | ||| | |||||||| |||| ||||| |||||||||||||| Sbjct 4925 TTCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 4972 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||| ||||||||||| || ||| || ||| ||| || | ||||||||| Sbjct 4092 GTGGACTCTTTCTGAATATTGTAGTCAGCCAAAGTCCGACCATCCTCCAATTGTTTTCCA 4151 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||| || ||| ||||| || || || ||||||||||| || ||| ||| Sbjct 4152 GCAAAGATCAGTCTCTGTTGATCTGGTGGAATCCCCTCCTTGTCTTGAATCTTCGCCTTC 4211 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| ||||| | || || ||||| | || | || || || ||||| || Sbjct 4212 ACATTGTCGATTGTGTCTGAGCTTTCAACTTCCAATGTGATTGTCTTTCCTGTCAGCGTC 4271 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 4272 TTCACGAAAATCTGCAT 4288 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | ||||| || || || |||||||| || | | || ||| || || Sbjct 4992 ACCAAATGCAGGGTAGATTCCTTCTGGATATTGTAGTCAGCAAGAGTTCGACCGTCCTCA 5051 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || ||||| | |||| || ||| ||||| ||||| || ||||||||||| | Sbjct 5052 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGAGGGATACCCTCCTTGTCTTGG 5111 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 ||||| ||||| | || | || || | ||| || || || | || | |||||| Sbjct 5112 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 5171 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| || ||||| Sbjct 5172 CCAGTAAGGGTCTTCACAAATATTTGCAT 5200 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||| ||||| | ||||| || || || |||||||||||| | Sbjct 5202 CCACCACGAAGTCTAAGCACTAAATGGAGTGTAGATTCCTTCTGGATATTGTAATCGGCA 5261 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || || || || ||||| |||| | | ||| || ||||| || Sbjct 5262 AGCGTTCGGCCATCCTCAAGTTGCTTACCAGCAAAGATAAGCCTCTGTTGGTCGGGTGGA 5321 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 |||||||| || | | ||| | | || ||| | | || | ||||| | || || || Sbjct 5322 ATGCCCTCTTTAT-CTTGAATCTTTGCCTTTACATTGTCAATTGTGTCTGAGCTTTCCAC 5380 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| ||| | |||||||| || || ||||||| || || ||||| Sbjct 5381 CTCGAGGGTGATTGTTTTGCCAGTAAGGGTTTTTATGAAGATTTGCAT 5428 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || || || | ||| | ||||||||| | || || || ||||| || |||||||| | Sbjct 4290 CCCCCACGCAGTCGAAGCACCAAATGGAGAGTTGATTCCTTTTGGATGTTGTAATCAGCT 4349 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || | ||| || || ||||| || || |||||| | |||||| || || || Sbjct 4350 AAAGTTCTGCCATCTTCAAGTTGTTTGCCTGCAAAGATCAGCCTCTGCTGGTCAGGTGGG 4409 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTG-CTTGAGTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || |||||||||| | ||| | | || ||| | | |||| ||||| | || || || Sbjct 4410 ATTCCCTCCTTGT-CTTGAATCTTTGCCTTCACATTGTCGATAGTGTCGGAGCTTTCTAC 4468 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||| | || | || ||||| |||| || || || ||||||||||| Sbjct 4469 TTCCAGAGTGATGGTCTTGCCCGTCAATGTCTTCACGAAAATCTGCAT 4516 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475261575547520