Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq8682 205 1e-47 seq16876 176 6e-39 seq7398 149 8e-31 seq1209 143 3e-29 seq3977 95.1 2e-14 seq7478 86.0 8e-12 >seq8682 Length=13014 Score = 205 bits (226), Expect = 1e-47 Identities = 196/251 (78%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 7577 ATGACTTCCATGCCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGA 7636 || |||||||| |||||| ||||||||| | | || |||||||| || | |||||| Sbjct 6210 ATAACTTCCATACCAAGATTAGCACGGTTAATAATATCAGCCCAGGTATTAATTACACGA 6151 Query 7637 CCTTGACCATCAATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTG 7696 ||||||| ||||| | || |||||||| |||||||| || | |||||| ||||| ||| Sbjct 6150 CCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTG 6091 Query 7697 CTAACACCAAGAGCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGC 7756 |||| ||| | ||| |||||||| || || || || ||||| || || |||||||| || Sbjct 6090 CTAATACCTAAAGCGGTGAACCAAATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGT 6031 Query 7757 AGCGAACGGGAGTTGTTGAACGAAGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGA 7816 | ||||| ||||||||||| || ||||||||||||| || ||||| || || ||| Sbjct 6030 AAAGAACGAGAGTTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGA 5971 Query 7817 GCAGCAACGAT 7827 ||||| ||||| Sbjct 5970 GCAGCTACGAT 5960 >seq16876 Length=31318 Score = 176 bits (194), Expect = 6e-39 Identities = 207/279 (74%), Gaps = 6/279 (2%) Strand=Plus/Minus Query 7529 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATG 7588 ||| ||| ||| ||||| ||||||||||| || |||||||| || ||||| |||||| | Sbjct 28320 TCAACAGTAGCTAGGTCTAGAGGGAAGTTTTGCGCATTACGTTCATGCATAACTTCCCTA 28261 Query 7589 CCAAGACCAGCACGGTTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCA 7648 |||||| |||| |||| | | |||| |||||| | | ||| ||||||||| |||| Sbjct 28260 CCAAGATTAGCATGGTTAATAATATCTGGCCAGGTATGAATTACATGACCTTGACTATCA 28201 Query 7649 ATGATGGACTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGA 7708 | | | |||||||| || ||| || | |||||| ||||| ||||||| ||| | | Sbjct 28200 ACTACAAATTGGTTGAAATTTCAACAATTTAAGTTGAAAGCCATAGTGCTAATACCTAAA 28141 Query 7709 GCAGTGAACCAGATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAG 7768 || |||||| | || | || ||||| || || ||||| || || | ||||||||| Sbjct 28140 GCTGTGAAC----TACCTATTACAGGCCAAGCAGCTAGGAATAAATGTAAAGAACGGGAG 28085 Query 7769 TTGTTGAACGA--AGCGTATTGGAAGATCAGACGACCAA 7805 |||||||| | ||| |||||||||| || || |||| Sbjct 28084 TTGTTGAAACACTAGCATATTGGAAGACCAATCGGCCAA 28046 >seq7398 Length=4807 Score = 149 bits (164), Expect = 8e-31 Identities = 205/287 (71%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 6346 ACCTTCATTCAATAGGATGTTCTTGGTATAGAACGTCTCGAACTCTGGATCCTCCGCTGC 6405 ||||| || || || || || ||||||||||| ||||| || | ||||| |||||| | Sbjct 2481 ACCTTTGTTTAAGAGAATATTTTTGGTATAGAAAGTCTCAAATTTAGGATCTTCCGCTAC 2422 Query 6406 TCTGATCTCTTGTGAAACAAAGTCATAAGCTCTAAGGTTAAGTGCAAGACCAATAATACC 6465 | || || || ||||| |||||||| || | ||||||| | | ||||| | || Sbjct 2421 ACGAATTTCCTGAGAAACGAAGTCATAGGCACGTAGGTTAAAGCCCAAACCAACTACTCC 2362 Query 6466 AATGCTAGAGGTCCAAAGACCCATAACAGGAACAAACAGCATAAAGAAATGTAGCCAACG 6525 || | |||| | ||| | || || ||||| | |||||||||||||| |||||| Sbjct 2361 AAGAGCACTCATCCATAAACCAGTTACTGGTACAAATAACATAAAGAAATGTAACCAACG 2302 Query 6526 CTTATTGCTGAAGGCGATACCAAAGATCTGAGACCAGAAACGATTAGCCGTGACCATCGA 6585 |||||| || || | |||||||| | ||||| || || || || |||||||| || Sbjct 2301 TTTATTGGAAAAAGCAACCCCAAAGATTTCGGACCAAAAGCGGTTTGCAGTGACCATTGA 2242 Query 6586 ATAGGTCTCCTCTTCTTGTGTAGGCTCAAACGCCTTGAAAGTATTTG 6632 ||| || || || |||| || || | ||| || | ||| ||||||| Sbjct 2241 ATAAGTTTCTTCAGCTTGAGTTGGGTTAAAAGCATGGAATGTATTTG 2195 >seq1209 Length=37697 Score = 143 bits (158), Expect = 3e-29 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Minus Query 7660 GTTGAAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCA 7719 |||||| || |||| || | |||||| | ||| ||||||| ||| | ||| |||||||| Sbjct 32707 GTTGAAATTTCAACCATTCAAGTTGAAAGTCATAGTGCTAATACCTAAAGCGGTGAACCA 32648 Query 7720 GATGCCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGA 7779 ||| | || | ||||| || || ||||||| || | ||| | ||||||||||| | Sbjct 32647 GATACGTACTTCAGGCCAAGCAGCTCGGAAGAAATGTAAAGAATGAGAGTTGTTGAAACA 32588 Query 7780 --AGCGTATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTC 7837 ||| ||||||||||||| || ||||| || || |||||||| ||||| | | || Sbjct 32587 TTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATGAGAAGTT 32528 Query 7838 TCTTCTTCTTGACCGAACTTATAACC 7863 ||||| ||||||||||| ||||||| Sbjct 32527 TCTTCCTCTTGACCGAATCTATAACC 32502 >seq3977 Length=13071 Score = 95.1 bits (104), Expect = 2e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 7534 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAG 7593 |||||| ||||| ||||||||||||||||||||||| || ||||| |||||||| ||||| Sbjct 86 AGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAG 27 Query 7594 ACCAGCACGGTT 7605 | ||||||||| Sbjct 26 ATTAGCACGGTT 15 >seq7478 Length=131533 Score = 86.0 bits (94), Expect = 8e-12 Identities = 241/360 (67%), Gaps = 14/360 (4%) Strand=Plus/Plus Query 6613 AAACGCCTTGAAA-GTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAG 6671 |||| ||||||| ||||||| || | |||||||||||| || | ||| | || ||| Sbjct 113365 AAACCACTTGAAATGTATTTGTTTCATTACCATCTTCAAATAACGCATTTTTTATGATAG 113424 Query 6672 CACCGTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAA 6731 |||| || ||| ||| | | | || || |||| ||| || || || |||| || Sbjct 113425 CACCACGAGTAGTACATAATAGAGAAACATTGAATATACTTGCAACTCCAATGATAT-AA 113483 Query 6732 ACGGGTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTG 6791 | | ||| | || ||| | || || || | || || | ||| |||||||| || Sbjct 113484 ATGAGTTCAATGTTATGTTATAAAATCCTTGAAAGAGAAGGATGAATCGGAATATAACTA 113543 Query 6792 CAA------CACC-AAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATG 6844 | | |||| |||| | ||| |||||||||||||||||| | | ||||| || Sbjct 113544 CTATATAGCCACCGAAACTA-GGCTCAAAGAACCAACTGGACT-ACTTGGTGGATAAATC 113601 Query 6845 AGAAAGACAGACACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGA 6904 | |||||| | ||||| | | || ||||| | || | |||||||| || | ||| Sbjct 113602 ATGAAGACAAAAACAAA-AGAATTATTGGACCCAACAATGTAATTGCATTATAAAGTCGA 113660 Query 6905 ATACCGACTAGA-CGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGC 6963 || || |||| | || | ||||| || | | |||| ||||||| || |||| || Sbjct 113661 AT-TTGAATAGATCAAGCAAGTTCAAATTGACATAACATGTAACCTATTAGTCCAAAAGC 113719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 621811809013120