Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq29839 93.3 5e-14 seq360 89.7 6e-13 >seq29839 Length=13537 Score = 93.3 bits (102), Expect = 5e-14 Identities = 156/225 (69%), Gaps = 3/225 (1%) Strand=Plus/Minus Query 127519 AGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 127578 |||||| || || || || || || || || || | || || ||||| | || Sbjct 4851 AGCAAAATCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCC 4792 Query 127579 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 127638 ||||| | || || || |||||||||||||| | || || || |||||||| || Sbjct 4791 AGGCATTAACCCACGTTTTTTCAACCAGAAAATGGAGCAGAAACTACCTGAGAAGAAAAT 4732 Query 127639 CCCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAA 127698 ||||| ||||| || ||||| || | ||||||||| || || | | |||||| Sbjct 4731 TCCCTCAACACAGGCAAACGCCAAAATACGCTCGGCGAACGA---TTCCGTGCTATCAAT 4675 Query 127699 CCACTTCATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGT 127743 |||||| | |||||| | ||||| |||| || ||| ||||| || Sbjct 4674 CCACTTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGT 4630 >seq360 Length=27789 Score = 89.7 bits (98), Expect = 6e-13 Identities = 187/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||||||||| || |||||||| ||||| || | ||||||||| | Sbjct 8697 AACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCACCA 8756 Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | ||| || | | || | || || || ||||| || |||||||| || || || Sbjct 8757 CCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAACACAATGCAA 8816 Query 12912 GGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 || | ||| || ||| || || | || |||||||| ||||| ||||| || Sbjct 8817 GG-AGCTTTGGACTTGGCTTTGTCGAACAAGTCCCGCACTCTTGAAGCACCCACACCAAC 8875 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGC 13030 ||||| || ||||| | | ||| | ||| || ||| || || | |||||| || Sbjct 8876 AAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCTTCACCGGC 8935 Query 13031 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | ||| ||||| || || || || || || || || Sbjct 8936 CACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCAGG 8971 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613198544527680