Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq26478 120 3e-22 seq3045 109 6e-19 seq22339 105 8e-18 seq31175 104 3e-17 seq18711 100 3e-16 seq21318 89.7 6e-13 seq8166 89.7 6e-13 >seq26478 Length=75715 Score = 120 bits (132), Expect = 3e-22 Identities = 166/231 (72%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 |||||| || | ||| | ||| || || | || ||||| |||||||||||||||| Sbjct 13966 GCCTCCCCTGAGACGGAGCACAAGGTGGAGCGTGGATTCCTTCTGGATATTGTAGTCGGC 13907 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 || || || |||| || |||||||| |||||||| ||||| ||||||||||||| || Sbjct 13906 AAGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCGAAAATCAAACGCTGCTGGTCGGGGGG 13847 Query 46486 CACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTC 46542 | | |||||||||| |||||| ||||| | | | || || |||| || Sbjct 13846 GATTCCCTCCTTGTCCTGGATCTTTGCCTTGACATTGTCAATGGTATCGGAGCTC---TC 13790 Query 46543 CACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || | || ||||| || ||||| || ||||| || ||||| ||||| Sbjct 13789 GACTTCGAGGGTAATGGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCAT 13739 >seq3045 Length=115554 Score = 109 bits (120), Expect = 6e-19 Identities = 141/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || || ||||| |||||||||| ||||| || | || || || |||||||||||||| Sbjct 11988 TCTTTCTGGATGTTGTAGTCGGCAAGAGTTCGGCCATCCTCAAGTTGCTTGCCGGCGAAG 12047 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| || ||||| || | || | | ||||| ||| |||||| ||| | ||| Sbjct 12048 ATCAAACGTTGCTGATCCGGGGGGATTCCTTCCTTATCCTGGATCTTGGCCTT-AACGTT 12106 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || ||||| || | |||||||| ||||| || || |||||||| Sbjct 12107 GTCGATGGTGTCAGAGGACTCCACCTCGAGGGTGATGGTCTTGCCTGTGAGGGTTTTAAC 12166 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 12167 GAAGATTTGCAT 12178 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| |||||||||||||||| || || || |||| || || ||||| || ||||| Sbjct 11760 TCCTTCTGGATATTGTAGTCGGCAAGGGTTCGGCCGTCCTCAAGTTGCTTTCCAGCGAAG 11819 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || |||||||||| || | | ||||||||| |||||| ||| ||| Sbjct 11820 ATGAGACGTTGCTGGTCGGGGGGAATTCCTTCCTTGTCCTGGATCTT-GGCTTTTACGTT 11878 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | |||||| || ||||| || | ||||| || || || || || ||||| || Sbjct 11879 GTCAATGGTGTCGGAGGACTCCACCTCGAGGGTGATTGTCTTCCCGGTAAGGGTTTTGAC 11938 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 11939 GAAGATTTGCAT 11950 Score = 96.9 bits (106), Expect = 4e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||| |||| || || ||| | || || | |||||| ||||| ||| Sbjct 11532 TCCTTCTGAATGTTGTAATCGGCAAGGGTTCGCCCATCTTCCAACTGCTTTCCGGCAAAT 11591 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | | ||||| ||| |||||| ||| | | Sbjct 11592 ATCAATCTCTGCTGGTCTGGGGGGATACCTTCCTTATCCTGGATCTTGGCCTTCACGTTA 11651 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| ||| ||||| || | |||||||| || || || || || || || Sbjct 11652 TCAATAGTGTCGGACGACTCCACCTCAAGGGTGATGGTCTTTCCGGTAAGGGTCTTGACG 11711 Query 46583 AAGATTTGCAT 46593 ||||||||||| Sbjct 11712 AAGATTTGCAT 11722 >seq22339 Length=139203 Score = 105 bits (116), Expect = 8e-18 Identities = 140/192 (73%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||||| | || || | || ||||| ||||| |||||||| Sbjct 90802 TCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAA 90861 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | || ||||| || | || | | ||||||||| |||||| ||||| ||| Sbjct 90862 ATGAGACGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 90920 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || ||| || || || | |||||||| ||||| || || |||||||| Sbjct 90921 GTCGATGGTATCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTTTTAAC 90980 Query 46582 AAAGATTTGCAT 46593 ||||||||||| Sbjct 90981 GAAGATTTGCAT 90992 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 ||||| || | ||| |||||||||||| |||||||||| | || || | || ||| Sbjct 90556 ACCAGGTGGAGAGTAGACTCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCG 90615 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 || ||||| |||||||| || | || ||||| || | || | | || |||||| | Sbjct 90616 AGTTGCTTTCCGGCGAAGATGAGACGTTGCTGATCTGGGGGAATTCCTTCTTTGTCCTGG 90675 Query 46505 ATCTTCTTCTTGAGCGTCG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| ||| | ||| | | | || || || || || || | |||||||| || Sbjct 90676 ATCTTGGCCTTTA-CGTTGTCGATGGTATCAGATGACTCGACCTCAAGGGTGATGGTCTT 90734 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||| ||||| || || || || |||||||| Sbjct 90735 GCCGGTCAGGGTCTTGACGAAAATTTGCAT 90764 Score = 84.2 bits (92), Expect = 2e-11 Identities = 148/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || || | || |||||| ||||| ||||| || | || || || | Sbjct 90321 ACGCAACACAAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAATCAGCAAGGGTACGACC 90380 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 ||| || | ||||| |||||||| || | | || ||||| | || | | ||||| Sbjct 90381 GTCTTCTAATTGCTTCCCGGCGAAGATGAGTCTTTGTTGGTCTGGGGGAATTCCTTCCTT 90440 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| ||||| | | | || || ||||| || || | ||||| Sbjct 90441 GTCCTGGATCTTTGCCTTGACGTTATCGATGGTATCAGAGGATTCAACCTCGAGGGTGAT 90500 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || ||||| || ||||| || || ||||| Sbjct 90501 GGTTTTACCGGTCAGGGTCTTAACGAAAATCTGCAT 90536 >seq31175 Length=13598 Score = 104 bits (114), Expect = 3e-17 Identities = 142/196 (72%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||||||||| |||||||||| | || || | || ||||| ||||| |||||||| Sbjct 7477 TCCTTTTGGATGTTGTAGTCGGCCAACGTACGGCCATCCTCGAGTTGCTTTCCGGCGAAA 7536 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || | | ||||| || | || | | ||||||||| |||||| ||||| ||| Sbjct 7537 ATGAGAAGTTGCTGATCTGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGA-CGTT 7595 Query 46523 G-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | || || ||| || || || | |||||||| ||||| || || |||||||| Sbjct 7596 GTCGATGGTATCAGACGACTCAACCTCAAGGGTGATGGTCTTGCCAGTTAGGGTTTTAAC 7655 Query 46582 AAAGATTTGCATTTTG 46597 ||||||||||| ||| Sbjct 7656 GAAGATTTGCATCTTG 7671 >seq18711 Length=80062 Score = 100 bits (110), Expect = 3e-16 Identities = 155/220 (70%), Gaps = 6/220 (3%) Strand=Plus/Minus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||| ||| || || | || ||||||||| ||||||||||||| ||| || || | Sbjct 40593 ACGCAGCACAAGGTGAAGAGTGGACTCCTTTTGAATATTGTAGTCGGCTAGTGTCCGTCC 40534 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||||||||| ||||| ||||| | |||||||| | || | | || || Sbjct 40533 ATCTTCGAGCTGCTTGCCTGCGAAGATCAACCTTTGCTGGTCCGGGGGAATACCTTCTTT 40474 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTC---GCTCGATTCCACATCCACCGT 46554 ||| ||||| |||| | | | ||||| ||| ||| || || | || Sbjct 40473 GTCTTGAATCTTAGCTTTGACATTGTCGATTGTGTCTGAGCT---TTCAACCTCTAGTGT 40417 Query 46555 GATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 || || || ||||| |||||||| ||||| ||||||||| Sbjct 40416 AATAGTCTTCCCCGTAAGCGTTTTGACAAAAATTTGCATT 40377 >seq21318 Length=12341 Score = 89.7 bits (98), Expect = 6e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 |||| ||||| ||| ||||| |||||||||||||| | ||||| || |||| || Sbjct 4992 ACCAAATGCAGGGTAGATTCCTTCTGGATATTGTAGTCAGCAAGAGTTCGACCGTCCTCA 5051 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 |||||||| || || || |||| | ||| || || | || | | ||||||||| | Sbjct 5052 AGCTGCTTACCAGCAAAAATCAGTCTCTGTTGATCAGGAGGGATACCCTCCTTGTCTTGG 5111 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||||| | | | || || |||||| || | || ||||||||| Sbjct 5112 ATTTTAGCCTTGACATTGTCAATTGTATCAGAACTTTCCACCTCAAGAGTAATGGTTTTG 5171 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || || || || || ||||| |||||||| Sbjct 5172 CCAGTAAGGGTCTTCACAAATATTTGCAT 5200 >seq8166 Length=147256 Score = 89.7 bits (98), Expect = 6e-13 Identities = 140/199 (70%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||||| || || || | || || |||||||| |||||||| Sbjct 120256 CTCCTTCTGGATGTTGTAGTCGGCAAGTGTTCGACCATCCTCCAGCTGCTTACCGGCGAA 120315 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | ||||||||||| | ||| | | |||||||||| ||||| ||| | | Sbjct 120316 AATGAGACGCTGCTGGTCCGGCGGTATTCCCTCCTTGTCCTGAATCTTTGCCTTAACATT 120375 Query 46522 CGCCACCGTGTC---GCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTT 46578 | | || || ||| || || || | || ||||| || || || |||||||| Sbjct 120376 ATCGATGGTATCAGAACTC---TCGACCTCGAGAGTTATGGTCTTCCCGGTAAGCGTTTT 120432 Query 46579 AACAAAGATTTGCATTTTG 46597 || ||||| ||||| ||| Sbjct 120433 CACGAAGATCTGCATATTG 120451 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564954028560960