Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq18711 116 3e-21 seq21318 86.0 4e-12 >seq18711 Length=80062 Score = 116 bits (128), Expect = 3e-21 Identities = 168/234 (72%), Gaps = 5/234 (2%) Strand=Plus/Minus Query 39488 CATCGCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAAT 39547 |||| || || || | |||||| ||||| || | ||| ||| ||||| |||||||| | Sbjct 40836 CATC-CCTCCACGAAGACGCAGCACCAAGTGGAGAGTCGATTCCTTTTGAATATTATAGT 40778 Query 39548 CGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCG 39607 |||| | | | |||| |||||||| ||||| | |||||||| | ||| || || | Sbjct 40777 CGGCTAGAGTCCTGCCATCCTCCAATTGCTTCCCAGCGAAAATTAACCTCTGTTGGTCTG 40718 Query 39608 AGGGTACGCCTTCTTTGTCGCATATTTTTTGTTTAA--TCGTCGCTACTGTGTCTGCGCT 39665 || | |||||||| || ||| || ||||| | |||| || || |||| || Sbjct 40717 GTGGGATCCCTTCTTTATCTTGTATCTTAGCTTTAACGTTGTCGATA--GTATCTGAACT 40660 Query 39666 TTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || ||||||||||||||||| || ||||| || || || || || ||||| Sbjct 40659 CTCAACTTCCAAAGTAATTGTTTTTCCGGTTAAGGTCTTCACAAAAATTTGCAT 40606 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || || ||||| || |||||||| | || |||||||||||| ||||||||||| Sbjct 40148 CCACCGCGTAAACGGAGCACCAAATGTAGGGTTGATTCTTTTTGTATGTTATAATCGGCG 40089 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | || |||| || | || || || | ||||| | | |||||| || | || Sbjct 40088 AGGGTTCGACCATCCTCGAGCTGCTTTCCAGCGAAAATAAGCCTCTGCTGGTCTGGAGGA 40029 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTG--TTTA-ATCGTCGCTACTGTGTCTGCGCTTTCC 39669 | |||||||| || | | |||| | |||| || ||| || || || | ||||| Sbjct 40028 ATTCCTTCTTTATC-CTGAATTTTGGCCTTTACATTGTCAATA--GTATCAGAACTTTCA 39972 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || | || |||||||| || || | |||||| |||||||| ||||| Sbjct 39971 ACCTCAAGGGTTATTGTTTTGCCGGTGAGAGTTTTCACGAAGATTTGCAT 39922 >seq21318 Length=12341 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552 || || ||||| || || ||||||||||| || ||| ||||| || |||||||| || Sbjct 4746 CCACCACGCAATCGAAGCACCAAATGCAACGTCGATTCCTTTTGAATGTTATAATCTGCT 4805 Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612 | | | | || || | || || || ||||||| || | ||| || || | || Sbjct 4806 AGAGTCCTGCCGTCTTCAAGCTGCTTACCAGCAAAAATCAACCTCTGTTGGTCAGGTGGA 4865 Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672 | ||| || || || || || ||| | | | | ||| |||| ||| ||||| Sbjct 4866 ATGCCCTCCTTATCTTGGATCTTAGCTTTCACATTATCAATTGTATCTGAGCTCTCCACT 4925 Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || |||||||| || || || ||||| || || |||||||| Sbjct 4926 TCCAAGGTGATTGTTTTGCCAGTCAAGGTTTTCACAAAAATCTGCAT 4972 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 39529 TCTTTTTGTATATTATAATCGGCCAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAA 39588 ||||| || ||||| || || |||||| || |||| ||||||||||| || |||| Sbjct 4098 TCTTTCTGAATATTGTAGTCAGCCAAAGTCCGACCATCCTCCAATTGTTTTCCAGCAAAG 4157 Query 39589 ATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCG 39646 || | | ||| ||||| | || | || || ||||| | || || | || | Sbjct 4158 ATCAGTCTCTGTTGATCTGGTGGAATCCCCTCCTTGTCTTGAATCTTCGCCTTCACATTG 4217 Query 39647 TCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTA 39706 ||| | |||||||| |||||| || ||||| || ||||| || || || | || || | Sbjct 4218 TCG--ATTGTGTCTGAGCTTTCAACTTCCAATGTGATTGTCTTTCCTGTCAGCGTCTTCA 4275 Query 39707 CGAAGATCTGCAT 39719 |||| |||||||| Sbjct 4276 CGAAAATCTGCAT 4288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347199207395384