Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq8166 116 4e-21 seq22339 114 1e-20 seq18711 114 1e-20 seq31175 111 2e-19 seq3045 109 5e-19 seq21318 107 2e-18 >seq8166 Length=147256 Score = 116 bits (128), Expect = 4e-21 Identities = 150/207 (72%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| |||||||| || || || ||||| || |||| |||||| Sbjct 120450 AATATGCAGATCTTCGTGAAAACGCTTACCGGGAAGACCATAACTCTCGAGGTCGAGAGT 120391 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | || | | | | | |||| | ||| || | ||||| |||||||| || | ||| Sbjct 120390 TCTGATACCATCGATAATGTTAAGGCAAAGATTCAGGACAAGGAGGGAATACCGCCGGAC 120331 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| ||||||| ||| || || |||||||| || | || || || ||||||| Sbjct 120330 CAGCAGCGTCTCATTTTCGCCGGTAAGCAGCTGGAGGATGGTCGAACACTTGCCGACTAC 120271 Query 38421 AACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| ||||| | ||||| ||| Sbjct 120270 AACATCCAGAAGGAGTCCACGCTCCAT 120244 >seq22339 Length=139203 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| || || ||||| ||||||||| | || || ||| | | Sbjct 90992 ATGCAAATCTTCGTTAAAACCCTAACTGGCAAGACCATCACCCTTGAGGTTGAGTCGTCT 90933 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| ||||| || ||||||||| | || || Sbjct 90932 GATACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGATCA 90874 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| ||| || || || || || || | || || | ||||||||| Sbjct 90873 GCAACGTCTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGTACGTTGGCCGACTACAA 90814 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||||||| | || || || |||| || ||| Sbjct 90813 CATCCAAAAGGAATCAACCCTCCACCTGGTCCTCCGT 90777 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || || || |||||||||||| |||| || || || | Sbjct 90536 ATGCAGATTTTCGTTAAGACCCTGACCGGTAAAACCATCACCCTCGAGGTTGAATCCTCT 90477 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | ||| |||| ||||| || ||||||||| | ||||| Sbjct 90476 GATACCATCGATAACG-TCAAGGCAAAGATCCAGGACAAGGAAGGAATTCCCCCAGACCA 90418 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | ||||| | ||| || || || | || |||| || ||||| || ||||| Sbjct 90417 ACAAAGACTCATCTTCGCCGGGAAGCAATTAGAAGACGGTCGTACCCTTGCTGATTACAA 90358 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| |||| || || | ||| ||||| Sbjct 90357 CATCCAGAAGGAGTCGACCCTCCACCTTGTGTTGCGT 90321 Score = 109 bits (120), Expect = 5e-19 Identities = 156/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || ||||| ||||||||| | || |||||| | | Sbjct 90764 ATGCAAATTTTCGTCAAGACCCTGACCGGCAAGACCATCACCCTTGAGGTCGAGTCATCT 90705 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | | |||| | || | || |||| |||||||| ||||||||| | || || Sbjct 90704 GATACCATCGACAACG-TAAAGGCCAAGATCCAGGACAAAGAAGGAATTCCCCCAGATCA 90646 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||| | ||| || || || || || || | || || | ||||||||| Sbjct 90645 GCAACGTCTCATCTTCGCCGGAAAGCAACTCGAGGATGGCCGTACGTTGGCCGACTACAA 90586 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||| | || || || |||| || ||| Sbjct 90585 CATCCAAAAGGAGTCTACTCTCCACCTGGTCCTCCGT 90549 >seq18711 Length=80062 Score = 114 bits (126), Expect = 1e-20 Identities = 156/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| |||||||| || ||| | || || || | Sbjct 39922 ATGCAAATCTTCGTGAAAACTCTCACCGGCAAAACAATAACCCTTGAGGTTGAAAGTTCT 39981 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | ||||| | || ||||| |||||||| | ||||| Sbjct 39982 GATACTATTGACAATGTAAAGGCCAAAATTCAGGATAAAGAAGGAATTCCTCCAGACCAG 40041 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| |||| ||| || || ||||| || || | || |||||| ||| || ||| Sbjct 40042 CAGAGGCTTATTTTCGCTGGAAAGCAGCTCGAGGATGGTCGAACCCTCGCCGATTATAAC 40101 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTT 38461 || ||||| ||| | || || ||||||||||| ||||| Sbjct 40102 ATACAAAAAGAATCAACCCTACATTTGGTGCTCCGTTT 40139 Score = 107 bits (118), Expect = 2e-18 Identities = 154/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| ||||| ||||| || |||||||||||| | || || || | | Sbjct 40149 AATGCAAATCTTCGTGAAAACCCTCACCGGTAAAACCATCACCTTAGAGGTGGAAAGCTC 40208 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||| | | | | | | || | || |||| || |||||||| || ||| | ||||| Sbjct 40209 CGATACCATCGATAATGTGAAGGCTAAGATCCAAGATAAAGAGGGTATCCCCCCGGACCA 40268 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| | || || | ||| || ||||| || || || | || || | |||||||| Sbjct 40269 GCAGAGACTAATCTTCGCTGGTAAACAACTTGAAGATGGCCGGACTTTGGCGGACTACAA 40328 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||| || |||||| | || ||||||| ||||| ||| Sbjct 40329 CATTCAGAAGGAATCAACATTGCATTTAGTGCTCCGT 40365 Score = 82.4 bits (90), Expect = 8e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| ||||| || | || || || ||||| || | || || ||| | | Sbjct 40834 ATGCAAATATTTGTAAAGACCTTAACAGGAAAGACCATAACATTGGAGGTTGAGAGCTCA 40893 Query 38304 GACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| || |||| | || | ||||||| ||||| ||||| || || ||||||| Sbjct 40894 GACACTATTGACAACG-TGAAGGCTAAAATCCAGGACAAGGAGGGTATCCCTCCCGACCA 40952 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | |||| ||| || |||||| |||| || | || || | ||| ||||| Sbjct 40953 GCAAAGGTTGATTTTCGCTGGAAAACAGTTGGAGGATGGACGTACATTGGCCGATTACAA 41012 Query 38423 CATCCAAAAGGA 38434 ||| |||||||| Sbjct 41013 CATTCAAAAGGA 41024 >seq31175 Length=13598 Score = 111 bits (122), Expect = 2e-19 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || |||||||| ||||| ||||| || || ||||| ||||||||| | || || ||| | Sbjct 7670 AAGATGCAAATCTTCGTTAAAACCCTAACTGGCAAGACCATCACCCTTGAGGTTGAGTCG 7611 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | || | | | | |||| | || | || |||| ||||| || ||||||||| | || Sbjct 7610 TCTGATACCATCGACAACG-TCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCAGA 7552 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || || | ||||||| ||| || || || || || || | || || | |||||| Sbjct 7551 TCAGCAACTTCTCATTTTCGCCGGAAAGCAACTCGAGGATGGCCGTACGTTGGCCGACTA 7492 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||||| | || || || |||| || ||| Sbjct 7491 CAACATCCAAAAGGAATCAACCCTCCACCTGGTCCTCCGT 7452 >seq3045 Length=115554 Score = 109 bits (120), Expect = 5e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| ||||| ||||| ||||| ||||||||| |||| || ||| || | Sbjct 12178 ATGCAAATCTTCGTTAAAACCCTCACAGGCAAGACCATCACCCTCGAGGTGGAGTCCTCT 12119 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| |||| | || |||| || || || ||||| ||| | || || Sbjct 12118 GACACCATCGACAACG-TTAAGGCCAAGATCCAGGATAAGGAAGGAATCCCCCCGGATCA 12060 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || | || | ||| ||||| || || || || | || || || ||||||||| Sbjct 12059 GCAACGTTTGATCTTCGCCGGCAAGCAACTTGAGGATGGCCGAACTCTTGCCGACTACAA 12000 Query 38423 CATCCAAAAGGAAGCGACGCTGCA 38446 |||||| || ||| | || || || Sbjct 11999 CATCCAGAAAGAATCAACTCTTCA 11976 Score = 91.5 bits (100), Expect = 1e-13 Identities = 152/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || || ||||||||| | || || ||| | | Sbjct 11494 ATGCAAATTTTTGTGAAAACTCTCACCGGAAAGACCATCACCTTGGAGGTTGAGTCTTCA 11435 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | |||| | || | || || | ||||| || || |||||| | ||||| Sbjct 11434 GACACAATTGACAACG-TGAAGGCCAAGATTCAAGACAAGGAAGGTATTCCCCCAGACCA 11376 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | ||||| | || || ||||| |||| || | || || || || ||||| Sbjct 11375 ACAGAGACTCATCTTTGCTGGGAAACAATTGGAAGATGGCCGAACTCTTGCAGATTACAA 11316 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| ||||| | || || ||| | || ||||| Sbjct 11315 CATCCAGAAGGAGTCTACTCTCCATCTTGTCTTGCGT 11279 >seq21318 Length=12341 Score = 107 bits (118), Expect = 2e-18 Identities = 151/212 (71%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||| ||||||| || || |||||||| |||||| |||| || || | | Sbjct 5428 ATGCAAATCTTCATAAAAACCCTTACTGGCAAAACAATCACCCTCGAGGTGGAAAGCTCA 5369 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | ||| || | || |||||||| ||||| |||||||| Sbjct 5368 GACACAATTGACAATGTAAAGGCAAAGATTCAAGATAAAGAGGGCATTCCACCCGACCAA 5309 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || || || || || | || || || ||| ||||| Sbjct 5308 CAGAGGCTTATCTTTGCTGGTAAGCAACTTGAGGATGGCCGAACGCTTGCCGATTACAAT 5249 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCT 38455 ||||| |||||| | || || ||||| ||||| Sbjct 5248 ATCCAGAAGGAATCTACACTCCATTTAGTGCT 5217 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| | || |||||||| |||||| | || || ||| | | Sbjct 4972 ATGCAGATTTTTGTGAAAACCTTGACTGGCAAAACAATCACCTTGGAAGTGGAGAGCTCA 4913 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | |||| || |||| || || ||||| ||||| | |||||| Sbjct 4912 GATACAATTGATAATGTGAAAGCTAAGATCCAAGATAAGGAGGGCATTCCACCTGACCAA 4853 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | |||| || || || ||||| || |||| | || || || || ||| Sbjct 4852 CAGAGGTTGATTTTTGCTGGTAAGCAGCTTGAAGACGGCAGGACTCTAGCAGATTATAAC 4793 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||| ||||| ||||||||||||| || ||| | || || Sbjct 4792 ATTCAAAAGGAATCGACGTTGCATTTGGTGCTTCGATTGCGTGGTGG 4746 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || || | |||||||| |||||||| | || || || | | Sbjct 4517 AATGCAGATTTTCGTGAAGACATTGACGGGCAAGACCATCACTCTGGAAGTAGAAAGCTC 4458 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 ||||| | | | | || | ||| || | ||||| |||||||| || | ||||| Sbjct 4457 CGACACTATCGACAATGTGAAGGCAAAGATTCAAGACAAGGAGGGAATCCCACCTGACCA 4398 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAAC-GACTACA 38421 ||| |||| || | || |||||||| || || || | || | | | | | || |||| Sbjct 4397 GCAGAGGCTGATCTTTGCAGGCAAACAACTTGAAGATG-GCAGAACTTTAGCTGATTACA 4339 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||||||||| | || || ||||||||||| || Sbjct 4338 ACATCCAAAAGGAATCAACTCTCCATTTGGTGCTTCG 4302 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||||||||| || || || || || ||||||||||| || | || || || | Sbjct 5200 ATGCAAATATTTGTGAAGACCCTTACTGGCAAAACCATTACTCTTGAGGTGGAAAGTTCT 5141 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | ||||||| ||||| ||||| || || | || ||| Sbjct 5140 GATACAATTGACAATGTCAAGGCTAAAATCCAAGACAAGGAGGGTATCCCTCCTGATCAA 5081 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | || |||| || || || ||||| || |||| || || || |||||||| Sbjct 5080 CAGAGACTGATTTTTGCTGGTAAGCAGCTTGAGGACGGTCGAACTCTTGCTGACTACAAT 5021 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||| |||||| | || ||||||||||| || || Sbjct 5020 ATCCAGAAGGAATCTACCCTGCATTTGGTTCTTCG 4986 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499921163064320