Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq360 138 1e-27 seq30366 136 5e-27 seq29839 102 1e-16 seq23185 86.0 8e-12 >seq360 Length=27789 Score = 138 bits (152), Expect = 1e-27 Identities = 278/408 (68%), Gaps = 6/408 (1%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| ||||| ||||| || |||||||| || | ||||||||| | Sbjct 8696 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCACC 8755 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | ||| || | | || | ||||| |||||||||||||||||||| || ||||| Sbjct 8756 ACCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAACACAATGCA 8815 Query 16094 TGGTTGATTTTCGCGAGCGACT-TCAAAGAGATCCCGTACACGCTTG--GCGCCCACACC 16150 || | ||| | | | || || | ||||| ||| |||| || |||||||| Sbjct 8816 AGGA-GCTTTGGACTTGGCTTTGTCGAACAAGTCCCG--CACTCTTGAAGCACCCACACC 8872 Query 16151 AACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACC 16210 |||||||| || ||||| | || ||| | ||| || ||| || ||| || |||||| Sbjct 8873 AACAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCTTCACC 8932 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 || | ||| ||||| |||||||| || || ||||| ||| || | ||||| || Sbjct 8933 GGCCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCAGGCGGTCCTACAAGGAGACACCC 8992 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | ||| || || || ||| | ||| | ||||| | || | ||||| || | Sbjct 8993 TTTTGGGATTTTAGCTCCAAGAGCTGTGTACTTGTCAGGGTTTTTCAAGAAATCAACCAC 9052 Query 16331 CTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 16378 |||| ||||||| ||||| |||| || ||||||| | ||| Sbjct 9053 TTCTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAA 9100 >seq30366 Length=17364 Score = 136 bits (150), Expect = 5e-27 Identities = 292/427 (68%), Gaps = 22/427 (5%) Strand=Plus/Minus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACC--TGTTTCGTTATCAA 15975 ||||| || || | | || || || || || |||| ||| || |||||| | ||| Sbjct 11769 TCAAGAATGTCTGCCCTGTTAGTGGCAGCAATTACAATAATCCCAGTGTTTCCCT--CAA 11712 Query 15976 AACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 16035 | |||||||| || || | ||||||||||| |||||||| ||||| |||||| | Sbjct 11711 ACCCATCCATTTCAGTTAGAAGCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC----- 11657 Query 16036 TACCACCA---GCACTG---CGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGA 16089 ||||||| || || | ||| ||| || |||||||| ||||||| || || | Sbjct 11656 -ACCACCAATGCCAGTGCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAA 11598 Query 16090 TGCATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCAC 16147 |||| ||| |||||| | | | |||| |||||||| || || || || || | Sbjct 11597 TGCAAGGTGCATTTTC-CTTG-GCCTTCTTGAAGAGATCACGAACTCGAGAAGCACCAAT 11540 Query 16148 ACCAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATT 16206 ||||||||||||||| ||||| | | | ||| || | || || |||||| | || Sbjct 11539 ACCAACAAACATCTCAACAAACTCAGAACCTGAA-ATGGAGAAAAATGGGACACCTGCTT 11481 Query 16207 CACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGG 16266 |||| |||||||| ||| || | |||||| || || ||||| ||| | || || Sbjct 11480 CACCAGCAATGGCCTTGGCTAGCAAAGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAA 11421 Query 16267 CACCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCA 16326 ||||| ||||| || ||| || | | |||||||| | ||| ||||| |||| Sbjct 11420 CACCTTTAGGAATGCGAGCTCCAACAGCAGTGAACCTCTCAGGCTTCTTGAGAAACTCCA 11361 Query 16327 CAATCTC 16333 | | ||| Sbjct 11360 CCACCTC 11354 >seq29839 Length=13537 Score = 102 bits (112), Expect = 1e-16 Identities = 394/607 (65%), Gaps = 19/607 (3%) Strand=Plus/Plus Query 101721 GAACCTCTCCTAGCCCCCACACTAAACAGATTTACTG--TGTTCCCCCTGAAGTATCCAC 101778 || |||||||| ||||||| | | | || ||| ||||||| | | ||||| | Sbjct 4243 GAGCCTCTCCTCGCCCCCAACCCCGATCGCTT--CTGCATGTTCCCAATTCATTATCCTC 4300 Query 101779 ACCTCTGGGAACTCTATAAGAAGGCTCAAATGAGTAATT--GGACTGCTGAAGAGGTAGA 101836 | ||||||| | || ||||| || || | | || ||||||| || || || || Sbjct 4301 AAATCTGGGAGATGTACAAGAAAGCCGAA--GCCTCCTTCTGGACTGCCGAGGAAGTCGA 4358 Query 101837 TCTCTCAAAGGAT-TTGGACGATTGGAAGACTCTAAATGAAAATGAAAAGAAATTCATAA 101895 ||||||| | || || | | | |||| || ||| | | || || | ||||| | Sbjct 4359 TCTCTCACAAGACCTTCGCCACTGGGAATCCT-TAACTTCTGACGAGAAACATTTCATCA 4417 Query 101896 AATACATCCTGGCATTCTTTGCTGGGTCCGATGGAATTGTTTTTGAGAATATCAATAACA 101955 | |||| || ||||| |||| || ||||| || ||||| |||||| || | Sbjct 4418 CTCATGTCCTTGCCTTCTTCGCTGCTTCTGATGGCATCGTTTTGGAGAATCTCGCCGG-A 4476 Query 101956 ACTTTGCTGAT-GAGGTGCAATCCTCTGAAGCGAGATCTTTCTATGCGTATCAA--TGTC 102012 || ||| || || ||| ||||||| ||| ||||||||| | ||| || | Sbjct 4477 CGGTTCATGAAAGAAGTCCAAGTTGCTGAAGCTAGAGCTTTCTATGGATTCCAAATTGCC 4536 Query 102013 ATAATGAAATGGTGCATGGGGAGACATACAGTAAACTCATAGACAAGTATATTAAGGATG 102072 || ||| | ||| |||| |||||| ||| | || | ||||| || || Sbjct 4537 ATCGAGAACA--TCCATTCCGAGATGTACAGTCTTCTCCTTGAAACCTATATCAAAAATT 4594 Query 102073 GTGCTGAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAG 102132 |||||||| | | | || || || |||| || || ||| | | ||||| | Sbjct 4595 CAAACGAGAAGAATCGGTTGTTCCGTGCTATTGAAACTGTCCCCTGTGTCAAGAAGAAGG 4654 Query 102133 CGGATTGGGCTATGAAGTGGTTTGATACAAAGTCGCGTTCCTTTGCTGAGCGACTCTTCG 102192 | |||||||| | |||||| |||||| | || || || || ||||| | || | Sbjct 4655 CTGATTGGGCGTTAAAGTGGATTGATAGCA---CGGAATCGTTCGCCGAGCGTATTTTGG 4711 Query 102193 CATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCA 102252 | ||||| ||||||||||| || |||||||| ||| |||||| | |||| ||| | | Sbjct 4712 CGTTTGCCTGTGTTGAGGGAATTTTCTTCTCAGGTAGTTTCTGCTCCATTTTCTGGTTGA 4771 Query 102253 AGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGG 102312 | || || || | ||||| || | ||||| |||||| | || || || || || | Sbjct 4772 AAAAACGTGGGTTAATGCCTGGATTAACGTTCTCAAACGAGTTGATTTCACGAGATGAAG 4831 Query 102313 GACTCCA 102319 | || || Sbjct 4832 GGCTTCA 4838 >seq23185 Length=144906 Score = 86.0 bits (94), Expect = 8e-12 Identities = 304/462 (66%), Gaps = 11/462 (2%) Strand=Plus/Minus Query 15879 ATCTTACGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 15938 |||| |||||||| ||||| || | | || || | ||| | |||||| | || Sbjct 4508 ATCTGTCGATCAAACCGACCAGGCCTCAACAGAGCTTTATCCAAAATATCAGGCCTGTTG 4449 Query 15939 GTTGCGGCGATGACAACAATACCTGTT-TCGTTATCAAAACCATCCATCTCTGTCAAAAG 15997 || | || | ||||||| || | | ||| |||| |||||||| || || | Sbjct 4448 GTACCAGCAAGTACAACAACCCCAGAAGTAGTTC-CAAACCCATCCATTTCAACCAGCAA 4390 Query 15998 CTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG--CATACCACCAGCACTGCGTTGC 16055 ||| |||| ||| ||| || ||||||||| || || | | || | | |||| Sbjct 4389 CTGATTAAGAGTACTTTCACGCTCATCATTCCCTCCACCAAAGCCCCCTCGGCCCCTTGC 4330 Query 16056 TT-TCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGAC 16114 | ||| | ||||| ||||||||||| || || || | ||| | || | ||| | Sbjct 4329 TCGTCCAATCGCATCTATCTCATCAATAAATACAATACTTGGAGCACATTGTCTAGCTTC 4270 Query 16115 TTCAAAGAGATCCCGTACAC-GCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 16173 || ||| || | | || | ||||| || || || |||||||| |||| ||| | || Sbjct 4269 TTGAAACAGGTTTCTAACCCTTGTTGGC-CCAACCCCCACAAACATTTCCATAAAATCTG 4211 Query 16174 CGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGA 16232 | | |||| | | ||| || |||| ||||||||| ||| | ||| || ||||| Sbjct 4210 ATCCAG-ACATGGACAGGAAAGGCACATCAGATTCACCTGCAGTTGCTTTTGCTAGAAGT 4152 Query 16233 GTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCC-ACT 16291 || || || ||||| || ||| |||| || |||||| ||||| || || || | Sbjct 4151 GTTTTCCCAGTACCAGGGGGACCAACGAGTAGAGCACCTTTGGGAATTTTTGCTCCTAAC 4092 Query 16292 TCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTC 16333 ||| | ||| ||| || | |||||| || | ||||| ||| Sbjct 4091 TCCTCA-TATTTCTTTGGATTCTTAAGGAAGTGCACAAACTC 4051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620430104498560