Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq30366 105 8e-18 seq29839 96.9 4e-15 >seq30366 Length=17364 Score = 105 bits (116), Expect = 8e-18 Identities = 313/479 (65%), Gaps = 28/479 (6%) Strand=Plus/Minus Query 11505 ATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCGGC 11564 ||||||||| || || | | || |||| |||||||| || | | ||| || || || Sbjct 11800 ATCGAAACGTCCAGGCCTCAATAAAGCAGAGTCAAGAATGTCTGCCCTGTTAGTGGCAGC 11741 Query 11565 AATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTGAT 11624 ||| || | ||| ||||| | || || || |||||||| || ||||||||||| | Sbjct 11740 AATTACAATAATCCCAGTGTTTCCCTCAAACCCATCCATTTCAGTTAGAAGCTGGTTAAG 11681 Query 11625 CGTCTGTTCACGCTCATCGTTGGAGGGCATACCACC--TGCCGAACGCTTCTT-----AC 11677 || ||||| || || || || | |||||| |||| | || |||| | Sbjct 11680 TGTTTGTTCTCGTTCGTCATT------CCCACCACCAATGCC-AGTGCCTCTTTGACGTC 11628 Query 11678 CGACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGA 11737 | ||||| ||||| ||||| | || || || || ||| || | |||| | || Sbjct 11627 CAACAGCATCAATTTCATCAACAAACACAATGCAAGGTGCATTTTCCTTGGCCTTCTTGA 11568 Query 11738 AAAGTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 | || ||||| || || || |||| ||| || ||||||||||| || | ||| Sbjct 11567 AGAGATCACGAACTCGAGAAGCACCAATACCAACAAACATCTCAACAAACT------CAG 11514 Query 11798 AACACTG-AATG------AAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGA 11850 ||| ||| |||| || || ||| | |||||||| ||||| || || | | Sbjct 11513 AAC-CTGAAATGGAGAAAAATGGGACACCTGCTTCACCAGCAATGGCCTTGGCTAGCAAA 11455 Query 11851 GTCTTACCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTT 11910 ||||| || || || || | |||| | ||||| | || || || || ||| Sbjct 11454 GTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACACCTTTAGGAATGCGAGCTCCAACA 11395 Query 11911 CCAAAGTAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGC 11969 || | | | ||||||||||||||| || ||||| | |||| | |||| |||||| Sbjct 11394 GCAGTGAACCTCTCAGGCTTCTTGAGAAACTCCACCACCTCCATGAAATCCTGCTTGGC 11336 >seq29839 Length=13537 Score = 96.9 bits (106), Expect = 4e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 119496 GCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCA 119555 ||||| || ||||||||||||||| || || || | ||| || ||| | |||| Sbjct 4850 GCAAAATCACAATGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCA 4791 Query 119556 GGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATG 119615 ||||| | || | ||| || | ||| || |||| || ||||| || || ||||| || Sbjct 4790 GGCATTAACCCACGTTTTTTCAACCAGAAAATGGAGCAGAAACTACCTGAGAAGAAAATT 4731 Query 119616 CCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAACCAC 119675 ||||| |||||||| || || || | |||||| || || | | | | || | |||| Sbjct 4730 CCCTCAACACAGGCAAACGCCAAAATACGCTCGGCGAACGATTCCGTGCTATCAATCCAC 4671 Query 119676 TTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTT 119718 || | ||||| | ||||| || | ||||||||||||| Sbjct 4670 TTTAACGCCCAATCAGCCTTCTTCTTGACACAGGGGACAGTTT 4628 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588679686174400