Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq30366 138 1e-27 seq360 138 1e-27 seq29839 118 1e-21 seq23185 91.5 2e-13 >seq30366 Length=17364 Score = 138 bits (152), Expect = 1e-27 Identities = 289/425 (68%), Gaps = 18/425 (4%) Strand=Plus/Minus Query 9225 TCAAGGATATCAACGCGATTCGTCGCGGCGATGACAACAATACC--TGTTTCATTATCAA 9282 ||||| || || | | || || || || || |||| ||| || |||||| | ||| Sbjct 11769 TCAAGAATGTCTGCCCTGTTAGTGGCAGCAATTACAATAATCCCAGTGTTTCCCT--CAA 11712 Query 9283 AACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCA 9342 | |||||||| || || | ||| ||||||| |||||||| ||||| |||||| | Sbjct 11711 ACCCATCCATTTCAGTTAGAAGCTGGTTAAGTGTTTGTTCTCGTTCGTCATTCCC----- 11657 Query 9343 TACCACCAG---CACTGCGT---TGCTTTCCCACGGCATCAATCTCATCAATGAAGACAA 9396 ||||||| || ||| | || ||| || |||||||| ||||||| || |||| Sbjct 11656 -ACCACCAATGCCAGTGCCTCTTTGACGTCCAACAGCATCAATTTCATCAACAAACACAA 11598 Query 9397 TACATGGTTGATTTTCGCGGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACAC 9456 | || ||| |||||| ||| | | |||||||| ||||| | || || | || Sbjct 11597 TGCAAGGTGCATTTTCCTTGGCCTTCTTGAAGAGATCACGAACTCGAGAAGCACCAATAC 11538 Query 9457 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 9515 ||||||||||||| ||||| | | | ||| || | || || |||||| | |||| Sbjct 11537 CAACAAACATCTCAACAAACTCAGAACCTGAA-ATGGAGAAAAATGGGACACCTGCTTCA 11479 Query 9516 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 9575 || |||||||| ||| || | |||||| || || ||||| ||| | || || || Sbjct 11478 CCAGCAATGGCCTTGGCTAGCAAAGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACA 11419 Query 9576 CCCCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACA 9635 || ||||| || ||| || | | |||||||| | ||||||||| ||||| Sbjct 11418 CCTTTAGGAATGCGAGCTCCAACAGCAGTGAACCTCTCAGGCTTCTTGAGAAACTCCACC 11359 Query 9636 ATCTC 9640 | ||| Sbjct 11358 ACCTC 11354 >seq360 Length=27789 Score = 138 bits (152), Expect = 1e-27 Identities = 278/407 (68%), Gaps = 4/407 (1%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||| ||||||||||| ||||| || || || |||||||| || | ||||||||| | Sbjct 8696 AAACCCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCACC 8755 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | ||| || | | || | ||||| |||||||||||||||||||| ||||| || Sbjct 8756 ACCAAGACCTGCCCCTCTCTGTCTCCCCACAGCATCAATCTCATCAATGAACACAATGCA 8815 Query 9401 TGGTTGATTTTCGCG-GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 || | ||| | ||| | || || | || || || ||| || |||||||||| Sbjct 8816 AGGA-GCTTTGGACTTGGCTTTGTCGAACAAGTCCCGCACTCTTGAAGCACCCACACCAA 8874 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||||| || ||||| | || ||| | ||| || ||| || ||| || |||||| | Sbjct 8875 CAAACAGTTCTACAAACTCTGAGGCAGCACACGAGAAGAATGGCACACCAGCTTCACCGG 8934 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCC- 9578 | | ||| ||||| |||||||| || || ||||| ||| || | |||| | ||||| Sbjct 8935 CCACGGCCCGGGCCAGAAGAGTTTTTCCGGTACCAGGCGGTCCTACAAGGA-GACACCCT 8993 Query 9579 CGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATC 9638 ||| || || || ||| | ||| | ||||| | || | ||||| || | Sbjct 8994 TTTGGGATTTTAGCTCCAAGAGCTGTGTACTTGTCAGGGTTTTTCAAGAAATCAACCACT 9053 Query 9639 TCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 9685 |||| ||||||| ||||| |||| || ||||||| | ||| Sbjct 9054 TCTTGCAATTCAAGCTTGGCTTGGTCAGCTCCAGCAACATCAGCAAA 9100 >seq29839 Length=13537 Score = 118 bits (130), Expect = 1e-21 Identities = 173/243 (71%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 117286 TGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCC 117345 || || || |||||||| ||||| | || |||||||| || || ||||| | || Sbjct 4838 TGAAGCCCTTCATCTCGTGAAATCAACTCGTTTGAGAACGTTAATCCAGGCATTAACCCA 4779 Query 117346 CGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACAC 117405 || || |||||||| |||| | |||||| || |||||||| || ||||| ||||| Sbjct 4778 CGTTTTTTCAACCAGAAAATGGAGCAGAAACTACCTGAGAAGAAAATTCCCTCAACACAG 4719 Query 117406 GCAAACGCAAAAAGGCGCTCGGCGAAGGAGCGAGACTTTG-TGTCAAACCATTTCATTGC 117464 |||||||| |||| ||||||||||| ||| | || | |||| ||| || | || Sbjct 4718 GCAAACGCCAAAATACGCTCGGCGAA----CGATTCCGTGCTATCAATCCACTTTAACGC 4663 Query 117465 CCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGCTTCAAATAACTGCTTCTT 117524 ||| | |||||||||| | ||| || ||||||| || || || ||| | ||||| Sbjct 4662 CCAATCAGCCTTCTTCTTGACACAGGGGACAGTTTCAATAGCACGGAACAACCGATTCTT 4603 Query 117525 TTC 117527 || Sbjct 4602 CTC 4600 >seq23185 Length=144906 Score = 91.5 bits (100), Expect = 2e-13 Identities = 303/461 (66%), Gaps = 9/461 (2%) Strand=Plus/Minus Query 9186 ATCTTACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTC 9245 |||| |||||||| ||||| || | | || || | ||| | |||||| | || Sbjct 4508 ATCTGTCGATCAAACCGACCAGGCCTCAACAGAGCTTTATCCAAAATATCAGGCCTGTTG 4449 Query 9246 GTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGT 9305 || | || | ||||||| || | | | |||| |||||||| || || | Sbjct 4448 GTACCAGCAAGTACAACAACCCCAGAAGTAGTTCCAAACCCATCCATTTCAACCAGCAAC 4389 Query 9306 TGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG--CATACCACCAGCACTGCGTTGCT 9363 || |||| ||| ||| || ||||||||| || || | | || | | ||||| Sbjct 4388 TGATTAAGAGTACTTTCACGCTCATCATTCCCTCCACCAAAGCCCCCTCGGCCCCTTGCT 4329 Query 9364 T-TCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATT 9422 ||| | ||||| ||||||||||| || ||||||| ||| | || | || | Sbjct 4328 CGTCCAATCGCATCTATCTCATCAATAAATACAATACTTGGAGCACATTGTCTAGCTTCT 4269 Query 9423 TCAAAGAGATCGCGAACCCTT-TTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGC 9481 | ||| || | | ||||||| ||||| || || || |||||||| |||| ||| | || Sbjct 4268 TGAAACAGGTTTCTAACCCTTGTTGGC-CCAACCCCCACAAACATTTCCATAAAATCTGA 4210 Query 9482 GGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 | | |||| | | ||| || |||| ||||||||| ||| | ||| || ||||| | Sbjct 4209 TCCAG-ACATGGACAGGAAAGGCACATCAGATTCACCTGCAGTTGCTTTTGCTAGAAGTG 4151 Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCC-ACTT 9599 | || || ||||| || ||| |||| || ||||| ||||| || || || | | Sbjct 4150 TTTTCCCAGTACCAGGGGGACCAACGAGTAGAGCACCTTTGGGAATTTTTGCTCCTAACT 4091 Query 9600 CCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTC 9640 || | ||| ||| || | ||| || || | ||||| ||| Sbjct 4090 CCTCA-TATTTCTTTGGATTCTTAAGGAAGTGCACAAACTC 4051 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589683980659520