Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015279.1 Length=190789 Score E Sequences producing significant alignments: (Bits) Value seq8682 192 7e-44 seq7398 168 8e-37 seq16876 145 9e-30 seq1209 125 9e-24 seq22748 87.8 2e-12 seq6129 87.8 2e-12 seq3977 86.0 8e-12 >seq8682 Length=13014 Score = 192 bits (212), Expect = 7e-44 Identities = 193/251 (77%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 180441 ATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGCATCGTTCAACAAC 180500 ||||| ||||| ||||| || || || || |||||||||| |||||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 180501 TCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGTTCACTGCA 180560 || ||||| | || |||||||| || || |||||||| || || || |||||||| || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 180561 CTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCATT 180620 | || | ||||| ||||| |||||| | || |||||||| |||||||| || | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 180621 GATGGTCAAGGTCGTGTGCTCAACACTTGGGCAGACGTACTCAACCGCGCTGGTCTGGGT 180680 ||| ||||||||||||| | || || ||||| || | | ||||| ||| ||| ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 180681 ATGGAAGTTAT 180691 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq7398 Length=4807 Score = 168 bits (186), Expect = 8e-37 Identities = 210/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 182066 GCAAATACTTTCAAAGCATTCGATTCAACTCAAGAAGAAGAAACCTATTCAATGGTTACA 182125 |||||||| ||| | || || | ||||||||| |||||||| ||||||||||| || Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 182126 GCGAACCGCTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGCAATAAGAGGTGGTTGCAT 182185 || |||||||| ||||| | ||||| || |||| ||| |||||| | ||||| ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 182186 TTCTTTATGCTCTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGT 182245 ||||||||| | ||||| || || | ||| | |||| ||| | | || | ||||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 182246 CTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAAATCAGAGCATCAGAAGAC 182305 | | | ||||| ||||| |||||||| || || || ||||| | | | | ||||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 182306 CCAGAGTTCGAGACGTTCTACACAAAGAACATTCTCTTGAATGAAGGT 182353 || | || ||||| ||||| || || || |||||||| || ||||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGGT 2481 >seq16876 Length=31318 Score = 145 bits (160), Expect = 9e-30 Identities = 195/270 (72%), Gaps = 6/270 (2%) Strand=Plus/Plus Query 180472 TGATCTTCCAGTATGCA--TCGTTCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGC 180529 || ||||||| ||||| | ||||||||||||||||| | || || ||||| || || Sbjct 28055 TGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGC 28114 Query 180530 ATGGCCTGTCGTTGGCATCTGGTTCACTGCACTGGGCGTAAGCACCATGGCATTCAACCT 180589 |||||||| | || | |||||| || | || | ||||| ||||| |||||| | Sbjct 28115 TTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTT 28170 Query 180590 CAACGGTTTCAACTTCAACCAGTCCATCATTGATGGTCAAGGTCGTGTGCTCAACACTTG 180649 || ||| || |||||||| | | ||||| ||||||||| ||| | | || || Sbjct 28171 AAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTG 28230 Query 180650 GGCAGACGTACTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCA 180709 | |||| | | |||| ||| ||| |||| |||||||||||| || |||||||| || Sbjct 28231 GCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCA 28290 Query 180710 CAACTTCCCACTTGACCTGGCAGCTGCTGA 180739 |||||||| || ||||| || ||| ||| Sbjct 28291 AAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq1209 Length=37697 Score = 125 bits (138), Expect = 9e-24 Identities = 170/236 (72%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 180375 GAAACCACTGAAACTGAGTCCCAGAACTACGGTTACAAGTTTGGTCAAGAAGAAGAGACC 180434 ||||||| |||| ||| || || | ||||| | || |||||||| ||||| || Sbjct 32472 GAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTCGGTCAAGAGGAAGAAACT 32531 Query 180435 TACAACATCGTTGCTGCACATGGATACTTCGGTCGTCTGATCTTCCAGTATGC--ATCGT 180492 | | ||||| ||||| ||||| || || || || |||||||||| ||||| || | Sbjct 32532 TCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTT 32591 Query 180493 TCAACAACTCCCGTTCACTTCACTTCTTCCTGGCAGCATGGCCTGTCGTTGGCATCTGGT 180552 |||||||||| | ||| | || ||||||| || || ||||||| || | ||||||| Sbjct 32592 TCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGT 32651 Query 180553 TCACTGCACTGGGCGTAAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAAC 180608 |||| || | || | ||||| ||| | |||||| | || |||| || |||||| Sbjct 32652 TCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGAATGGTTGAAATTTCAAC 32707 >seq22748 Length=18834 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| || ||||||||||||| ||| Sbjct 10569 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACCGATTGGTCGTAGGTTCGAAT 10628 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 10629 CCTACTTGGGGAG 10641 >seq6129 Length=22929 Score = 87.8 bits (96), Expect = 2e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 141254 TTCCTCAGTAGCTCAGCGGCAGAGCCGACGACTGTTAATCGTCTGGTCGTAGGTTCAAAT 141313 |||||||||||||||| || ||||| | || ||||||| | |||||||| ||||||||| Sbjct 440 TTCCTCAGTAGCTCAGTGGTAGAGCGGTCGGCTGTTAACTGACTGGTCGTGGGTTCAAAT 381 Query 141314 CCTACCTGGGGAG 141326 ||||| ||||||| Sbjct 380 CCTACTTGGGGAG 368 >seq3977 Length=13071 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 180663 AACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTT 180722 ||||| ||| ||| ||||||||||||||||| || |||||||||||||||||||| || Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 180723 GACCTGGCAGCT 180734 ||||| || ||| Sbjct 75 GACCTAGCTGCT 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 610089709369920