Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq8682 147 3e-30 seq1209 127 2e-24 seq16876 122 1e-22 seq7398 109 6e-19 seq32842 91.5 2e-13 seq3485 91.5 2e-13 seq3977 87.8 2e-12 >seq8682 Length=13014 Score = 147 bits (162), Expect = 3e-30 Identities = 183/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 170095 ATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCATTCAACAAC 170154 || ||||| || || ||||| ||||| || | |||||||| ||||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 170155 TCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCT 170214 || | | |||| ||||||||||| | || ||||| ||| || | ||||| ||| || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 170215 ATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTAACCAATCAGTTGTT 170274 | ||||| |||| ||||| |||||||| ||||||||||| || |||||||| || ||| Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 170275 GATGCTAACGGAAAAATCGTCCCAACATGGGGTGATGTTCTAAACAGAGCAAACTTGGGT 170334 ||| | | || | | || |||| |||| || | ||| | || || | ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 170335 ATGGAAGTTAT 170345 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq1209 Length=37697 Score = 127 bits (140), Expect = 2e-24 Identities = 174/242 (72%), Gaps = 2/242 (1%) Strand=Plus/Plus Query 170023 ATCAGAGAAACAACAGAGCAAGAGTCACAGAACTATGGTTATAAGTTCGGACAAGAAGAA 170082 ||||| ||||| | ||| | || || || | ||||||| ||||| ||||| ||| Sbjct 32466 ATCAGGGAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTCGGTCAAGAGGAA 32525 Query 170083 GAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCT 170142 ||||| | | || ||||| || || ||||| ||||| || | |||||||| |||||| Sbjct 32526 GAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 32585 Query 170143 --TCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTG 170200 | ||||||||||| | |||| ||||||| ||| | || |||| ||| || Sbjct 32586 AATGTTTCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTA 32645 Query 170201 TATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAATGGTTTCAACTTTA 170260 | ||||| ||| || | ||||| |||| ||| | |||||||||||||||| || || | Sbjct 32646 TCTGGTTCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGAATGGTTGAAATTTCA 32705 Query 170261 AC 170262 || Sbjct 32706 AC 32707 >seq16876 Length=31318 Score = 122 bits (134), Expect = 1e-22 Identities = 188/267 (70%), Gaps = 6/267 (2%) Strand=Plus/Plus Query 170129 TCTTCCAGTATGCT--TCATTCAACAACTCAAGAAGTCTACACTTCTTCCTAGCAGTTTT 170186 ||||||| |||||| | ||||||||||| | | |||| || |||||||| | || Sbjct 28058 TCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGCTTG 28117 Query 170187 CCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAACTTGAA 170246 ||||| || || ||| || || | ||||| |||| ||||| |||||||| || Sbjct 28118 GCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAA 28173 Query 170247 TGGTTTCAACTTTAACCAATCAGTTGTTGATGCTAACGGAAAAATCGTCCCAACATGGGG 170306 | ||| || || ||||||| || |||||| | | || | | | | || ||| Sbjct 28174 TTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTGGCC 28233 Query 170307 TGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAA 170366 ||| || | ||| || || | |||| |||||||||||||||| | ||||| || || Sbjct 28234 AGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCAAAA 28293 Query 170367 CTTCCCACTAGACCTAGCATCTGCTGA 170393 |||||| ||||||||||| ||| ||| Sbjct 28294 CTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq7398 Length=4807 Score = 109 bits (120), Expect = 6e-19 Identities = 190/275 (69%), Gaps = 1/275 (0%) Strand=Plus/Plus Query 171198 ACATTCCGTGCCTTTGATCCTACACAGGAAGAAGAAACTTACAGTATGATTACAGCAAAC 171257 ||||||| ||| ||| | || || || | ||||||||||| ||| | || |||||| Sbjct 2200 ACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCAAAC 2259 Query 171258 AGATTCTGGTCACAGATATTTGGTATTGCTTTCTCTAACAAAAGATTTTTACACTTCCTT 171317 | || ||||| | || ||||| ||||||| || || ||| | | ||||| ||| || Sbjct 2260 CGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTT 2319 Query 171318 ATGTTGTTCGTTCCTGTCATGGGTATGTGGACATCATCTATAGGTATCGTAGGTCTAGCA 171377 ||||| || || || || | ||| | |||| || | || | || ||| | | Sbjct 2320 ATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTTTGGGC 2379 Query 171378 CTTAACCTCAGAGCATACGATTTTGTATCTCAAGAGATAAGAGCAGCAGAAGACCCAGAG 171437 ||||||| | || || || || || ||||| || || | | ||| ||||| || | Sbjct 2380 TTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGATCCTAAA 2439 Query 171438 TTCGAGACTTTCTACACTAAGAATATACTTCTTAA 171472 || ||||||||||| || || ||||| | |||||| Sbjct 2440 TTTGAGACTTTCTATACCAAAAATATTC-TCTTAA 2473 >seq32842 Length=35535 Score = 91.5 bits (100), Expect = 2e-13 Identities = 119/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 153264 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 153323 ||||||||| |||||| || ||||| || |||||||||||||| || |||||| | Sbjct 4247 GAGAATCCTGCTTGGTATACTCAGTACACGCCATATCAAGCTGAGATTTCACAGGGACGT 4188 Query 153324 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCA 153383 | ||| |||| | ||||| ||||| | |||||||| || || || | || || | Sbjct 4187 CTTGAATCTTTGCTTAATTATCAAACTTTAATCACAGATCTCACTGGTCTTCCCATGTCC 4128 Query 153384 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 153428 || || || | | ||||||| ||||| || || ||||| ||| Sbjct 4127 AATGCTTCATTGCTTGATGAAGGGACTGCTGCTGCTGAAGCTATG 4083 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 154989 CAGGTAGGACTAGCAAAACCATGTGAGTATGGTGCAGATGTATGTCATCTAAACTTACAT 155048 ||||| || ||| ||| ||| || | ||| || ||||| || ||||| || | || Sbjct 270 CAGGTGGGTCTAACAAGCCCAGGTTGGATTGGGGCTGATGTTTGCCATCTCAATCTCCAC 211 Query 155049 AAAACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATAGGTGT 155104 |||||||| || |||||||||||||| || || |||||| | || ||||| ||||| Sbjct 210 AAAACATTTTGCATTCCACATGGAGGAGGTGGCCCTGGCATGGGCCCTATTGGTGT 155 >seq3485 Length=85743 Score = 91.5 bits (100), Expect = 2e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 170529 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTTGTATTCATAGGATGGTCTGGT 170588 || ||| || | || ||||||||| ||| || ||||| || || |||| ||||| ||| Sbjct 21335 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 21394 Query 170589 CTTTTACTTCTGCCTTGTGCATACCTATCAATCGGTGGTTGGTTCTTAGGGACTACCTTC 170648 || || || | |||||||| || | | |||| |||||||| ||| || ||||| Sbjct 21395 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 21454 Query 170649 GTTACATCATGGTATACACATGG 170671 || || ||||||||||| ||||| Sbjct 21455 GTAACTTCATGGTATACCCATGG 21477 >seq3977 Length=13071 Score = 87.8 bits (96), Expect = 2e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 170307 TGATGTTCTAAACAGAGCAAACTTGGGTATGGAAGTTATGCATGAAAGAAATGCACACAA 170366 |||| || ||||| | || || | ||||||||||||||||||||| | ||||| ||||| Sbjct 5 TGATATTATAAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAA 64 Query 170367 CTTCCCACTAGACCTAGC 170384 |||||| ||||||||||| Sbjct 65 CTTCCCTCTAGACCTAGC 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578921398040320