Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015281.1 Length=179563 Score E Sequences producing significant alignments: (Bits) Value seq8682 210 3e-49 seq7398 161 1e-34 seq16876 158 1e-33 seq1209 143 3e-29 seq9099 111 2e-19 seq3977 84.2 3e-11 >seq8682 Length=13014 Score = 210 bits (232), Expect = 3e-49 Identities = 197/251 (78%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 168556 ATCGTAGCCGCTCATGGTTACTTCGGTCGTTTGATCTTCCAATACGCTTCATTCAACAAC 168615 |||||||| ||||||||||| || || || |||||||||||||| || ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 168616 TCCCGCTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCC 168675 || || || || || |||||||| ||||| |||||||| || || || ||||||||||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 168676 CTTGGCGTCTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTT 168735 | || | ||| ||||| |||||| | || |||||||| |||||||| || | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 168736 GATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGT 168795 ||| |||| |||||||| | || |||||||| ||| || | ||||| ||| ||| ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 168796 ATGGAAGTTAT 168806 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq7398 Length=4807 Score = 161 bits (178), Expect = 1e-34 Identities = 208/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 169949 GCAAATACTTTCAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 170008 |||||||| ||| | || ||| | | || || | ||||| |||||||| ||||||||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 170009 GCAAACCGCTTCTGGTCGCAGATCTTCGGTATTGCGTTTTCTAACAAGCGTTGGCTTCAT 170068 ||||||||||| ||||| | ||||| || |||| ||||| || || |||||| | ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 170069 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTTTGGACATCCTCTATTGGCATTATTGGC 170128 || || ||||| ||||| || || | ||| | |||| || |||| | |||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 170129 CTTGCTCTCAATCTTCGTGCTTACGATTTCGTGAGTCAGGAGATCAGAGCAGCAGAAGAT 170188 | | | || || ||||| || || ||||| |||||| || | | ||| |||||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 170189 CCAGAATTTGAGACCTTCTACACCAAAAACATCCTATTGAATGAAGG 170235 || |||||||||| ||||| |||||||| || || || || |||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGG 2480 >seq16876 Length=31318 Score = 158 bits (174), Expect = 1e-33 Identities = 202/277 (73%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 168580 GGTCGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGCTCCTTGCACTTCTTCC 168637 || || ||| |||||||||| ||| | |||||||||||||| || || || || |||| Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107 Query 168638 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCAT 168697 | ||||| |||||||| | || | |||||| || | || | ||| ||||| | Sbjct 28108 TAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163 Query 168698 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 168757 ||||| | || ||| || |||||||| | | ||||| |||| |||| ||| | Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223 Query 168758 ACACCTGGGCAGATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTA 168817 | |||||| ||||| || | |||| ||| ||| |||| ||||||||||||||| |||| Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283 Query 168818 ACGCACACAACTTCCCACTCGATCTTGCTGCTGCTGA 168854 | || || |||||||| || || || ||| ||| ||| Sbjct 28284 ATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq1209 Length=37697 Score = 143 bits (158), Expect = 3e-29 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 168520 GGTTACAAGTTCGGACAAGAAGAAGAAACATACAACATCGTAGCCGCTCATGGTTACTTC 168579 ||||| | ||||| ||||| |||||||| | | |||||||| ||||||||||| || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 168580 GGTCGTTTGATCTTCCAATACGCT--TCATTCAACAACTCCCGCTCCTTGCACTTCTTCC 168637 || || |||||||||||||| ||| | ||||||||||| | || || || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 168638 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTCTCCACGATGGCAT 168697 ||||| ||||||| || | |||||||||||||| | || | ||| ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 168698 TCAACCTGAACGGTTTCAACTTCAAC 168723 ||||| |||| |||| || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq9099 Length=14125 Score = 111 bits (122), Expect = 2e-19 Identities = 190/273 (70%), Gaps = 11/273 (4%) Strand=Plus/Minus Query 169356 GTTGGTCTGGTCTACTTCTTCTTCCCACTGCCTATCTTGCTATTGGAGGGTGGCTCACTG 169415 ||||||| ||||| | || |||| ||||||| ||||| | ||||| ||| | || | Sbjct 880 GTTGGTCCAGTCTATTGCTCTTTCCTTGTGCCTATTTTGCTGTCGGAGGTTGGTTTACAG 821 Query 169416 GTACAGCGTTTGTTACTTCCTGGTACACCCACGG---ACTC---GCTT--CCAGTTACT- 169466 ||||| | | ||| ||||| ||||| ||||| || || | | || | |||| || Sbjct 820 GTACAACCTCTGTAACTTCATGGTATACCCATGGTATACCCATGGATTGGCAAGTTCCTA 761 Query 169467 --TAGAAGGCGCTAACTTCCTCACTGCTGCTGTCAGTACACCTGCTGACGCTATGGGACA 169524 | ||||| |||||| | |||||||| | || |||||| | | | | || Sbjct 760 TTTGGAAGGATGCAACTTCTTAACTGCTGCAATTTCGACTCCTGCTAATAGTTTAGCCCA 701 Query 169525 CTCACTGCTCTTGCTATGGGGTCCAGAAGCACAAGGCGATTTCGTTCGCTGGTGTCAATT 169584 ||| || | || ||||||||| |||||| |||| ||||| | | ||||||||||| Sbjct 700 CTCTTTGTTGTTATTATGGGGTCTTGAAGCATAAGGAGATTTTACTTGTTGGTGTCAATT 641 Query 169585 GGGTGGTCTCTGGAACTTTGTAGCACTTCATGG 169617 |||||||| |||| ||||| || || || || Sbjct 640 AGGTGGTCTGTGGATTTTTGTTGCTCTCCACGG 608 >seq3977 Length=13071 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 168769 GATGTTCTGAACCGCGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCACACAAC 168828 ||| || | ||||| ||| ||| |||||||||||||||||||| ||||| || |||||| Sbjct 6 GATATTATAAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAAC 65 Query 168829 TTCCCACTCGATCTTGCTGCT 168849 ||||| || || || |||||| Sbjct 66 TTCCCTCTAGACCTAGCTGCT 86 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 574184582331840