Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015282.1 Length=174079 Score E Sequences producing significant alignments: (Bits) Value seq8682 196 5e-45 seq7398 176 5e-39 seq16876 158 1e-33 seq1209 149 7e-31 seq3485 98.7 1e-15 seq3977 86.0 7e-12 seq14341 82.4 8e-11 >seq8682 Length=13014 Score = 196 bits (216), Expect = 5e-45 Identities = 194/251 (77%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 164478 ATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCTTCATTCAACAAC 164537 || || || ||||| ||||| ||||| || ||||||||||||| || ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 164538 TCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCA 164597 || ||||| || || |||||||| ||||| |||||||| || || || ||||||||||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 164598 CTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATC 164657 | ||| || ||| ||||| |||||| | || |||||||| |||||||| || | | Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 164658 GATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGT 164717 ||| |||| |||||||| | || || ||||| || || | ||||| ||| ||| ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 164718 ATGGAAGTTAT 164728 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq7398 Length=4807 Score = 176 bits (194), Expect = 5e-39 Identities = 219/300 (73%), Gaps = 0/300 (0%) Strand=Plus/Plus Query 165824 GATGGTGACGATGCAAATACTTTCAAGGCATTTGACTCTACTCAAGAGGAAGAAACCTAC 165883 |||| || | ||||||||| ||| | || ||| || | ||||||| |||||||| || Sbjct 2182 GATGAGGATGGTGCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTAT 2241 Query 165884 TCAATGGTTACTGCAAACCGTTTCTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAG 165943 |||||||| ||||||||||| || ||||| | ||||| || |||| ||| ||||| Sbjct 2242 TCAATGGTCACTGCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAA 2301 Query 165944 AGGTGGTTGCATTTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATC 166003 | ||||| |||||||||||| | ||||| || || | ||| | |||| ||| | | Sbjct 2302 CGTTGGTTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTT 2361 Query 166004 GGTATTATTGGTCTTGCTCTCAACCTTCGTGCTTATGACTTTGTATCCCAAGAGATCAGA 166063 || | ||||| | | | ||||| ||||| |||||||| || || || || || | Sbjct 2362 GGAGTAGTTGGTTTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGT 2421 Query 166064 GCAGCAGAAGACCCAGAGTTTGAAACCTTCTACACGAAAAACATTCTCTTGAATGAAGGT 166123 | ||| ||||| || | ||||| || ||||| || ||||| |||||||| || ||||| Sbjct 2422 GTAGCGGAAGATCCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGGT 2481 >seq16876 Length=31318 Score = 158 bits (174), Expect = 1e-33 Identities = 203/279 (73%), Gaps = 6/279 (2%) Strand=Plus/Plus Query 164500 TTGGTCGTCTGATCTTCCAATACGCT--TCATTCAACAACTCCCGTTCCTTGCACTTCTT 164557 |||| || || |||||||||| ||| | ||||||||||||||||| || || || || Sbjct 28046 TTGGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATT 28105 Query 164558 CCTTGCTGCATGGCCTGTTGTTGGCATCTGGTTCACCGCACTTGGTGTTTCCACGATGGC 164617 ||| ||||| |||||||| | || | |||||| || | ||| || ||| ||||| Sbjct 28106 CCTAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGC 28161 Query 164618 ATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCATCGATGGTCAGGGTCGTGTGCT 164677 |||||| | || ||| || |||||||| | | | ||| |||| |||| ||| | Sbjct 28162 TTTCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAAT 28221 Query 164678 CAACACTTGGGCAGACGTTCTCAACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCG 164737 | || ||| |||| || | |||| ||| ||| |||| |||||||||||| || || Sbjct 28222 TCATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACG 28281 Query 164738 TAACGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 164776 ||| || || ||||||||||| || || ||| ||| ||| Sbjct 28282 TAATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq1209 Length=37697 Score = 149 bits (164), Expect = 7e-31 Identities = 175/236 (74%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 164412 GAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAAACA 164471 ||||||| |||| ||| || || | ||||| | || |||||||| |||||||| Sbjct 32472 GAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTCGGTCAAGAGGAAGAAACT 32531 Query 164472 TACAACATTGTTGCCGCTCACGGTTACTTTGGTCGTCTGATCTTCCAATACGCT--TCAT 164529 | | || || || ||||| ||||| ||||| || ||||||||||||| ||| | | Sbjct 32532 TCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTT 32591 Query 164530 TCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGCATCTGGT 164589 |||||||||| | ||| || || ||||||| ||||| ||||||| || | ||||||| Sbjct 32592 TCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGT 32651 Query 164590 TCACCGCACTTGGTGTTTCCACGATGGCATTCAACCTGAACGGTTTCAACTTCAAC 164645 ||||||| | ||| || ||| ||| | |||||| |||| |||| || |||||| Sbjct 32652 TCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGAATGGTTGAAATTTCAAC 32707 >seq3485 Length=85743 Score = 98.7 bits (108), Expect = 1e-15 Identities = 122/167 (73%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 165194 TTCGATGTCCTCGATGACTGGCTTAAACGAGATCGTTTCGTTTTTGTTGGTTGGTCTGGA 165253 |||||| | | ||||||||| | | || |||||||||||||| |||||||| || Sbjct 21335 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 21394 Query 165254 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTACTTTC 165313 || | || ||||| ||| ||| |||| | || |||||| |||| || || || || Sbjct 21395 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 21454 Query 165314 GCGACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG 165360 | || |||||||| || || ||||||||||||||| |||| || Sbjct 21455 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGG 21501 >seq3977 Length=13071 Score = 86.0 bits (94), Expect = 7e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 164700 AACCGCGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAACGCTCACAACTTCCCTCTG 164759 ||||| ||| ||| ||||||||||||||||| || ||||| ||||||||||||||||| Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 164760 GATCTCGCTGCT 164771 || || |||||| Sbjct 75 GACCTAGCTGCT 86 >seq14341 Length=38040 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/84 (82%), Gaps = 2/84 (2%) Strand=Plus/Minus Query 164509 TGATCTTCCAATACGCT--TCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTGCTGC 164566 ||||||||||||| ||| | ||||||||||| ||||| || || |||||||| ||||| Sbjct 2948 TGATCTTCCAATATGCTAGTGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAGCTGC 2889 Query 164567 ATGGCCTGTTGTTGGCATCTGGTT 164590 | |||||| || || |||||||| Sbjct 2888 TTCGCCTGTAGTAGGTATCTGGTT 2865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556644611133120