Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq8682 143 3e-29 seq1209 113 5e-20 seq16876 111 2e-19 seq3977 82.4 9e-11 >seq8682 Length=13014 Score = 143 bits (158), Expect = 3e-29 Identities = 183/252 (73%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 169183 TATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAA 169242 ||| || || || ||||| || || || |||| |||||||| ||||||||||||||||| Sbjct 5959 TATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAA 6018 Query 169243 CTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTC 169302 ||| | | | || ||||||||||| | | || || ||| || | ||||| ||| | Sbjct 6019 CTCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGC 6078 Query 169303 TATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGT 169362 | | ||||| | || ||||| |||||||| || || || || || |||||||| || || Sbjct 6079 TTTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGT 6138 Query 169363 AGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGG 169422 ||| | | ||| | ||| ||| |||| ||| | ||||| | || || ||||| Sbjct 6139 TGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGG 6198 Query 169423 TATGGAAGTAAT 169434 ||||||||| || Sbjct 6199 TATGGAAGTTAT 6210 >seq1209 Length=37697 Score = 113 bits (124), Expect = 5e-20 Identities = 172/241 (71%), Gaps = 7/241 (3%) Strand=Plus/Plus Query 169112 ATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAA 169171 ||||| || || | || | |||||| || | ||||| | ||||||||||| ||| Sbjct 32466 ATCAGGGAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTCGGTCAAGAGGAA 32525 Query 169172 GAAACCTATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGC- 169230 ||||| | | |||| || || || ||||| || || || |||| |||||||| ||||| Sbjct 32526 GAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 32585 Query 169231 -AAGTTTCAACAACTCAAGAAGTCTT--CACTTCTTCCTAGCAGTGTTCCCAGTTGTATG 169287 | ||||||||||||| | |||| || ||||||| ||| | | || | ||| | Sbjct 32586 AATGTTTCAACAACTC--TCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACG 32643 Query 169288 TGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTT 169347 | | ||||| ||| || | ||||| | || ||| | ||||||||||| || || || || Sbjct 32644 TATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGAATGG-TTGAAATT 32702 Query 169348 T 169348 | Sbjct 32703 T 32703 >seq16876 Length=31318 Score = 111 bits (122), Expect = 2e-19 Identities = 189/273 (69%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 169212 GATTAATCTTCCAGTATGCAAGT--TTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGC 169269 |||| ||||||| ||||| ||| ||||||||||| | | | || || |||||||| Sbjct 28052 GATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGC 28111 Query 169270 AGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAA 169329 | | || || || | | ||| || || | ||||| | || ||||| ||||| Sbjct 28112 TGCTTGGCCTGTAATAGG----TAGTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAA 28167 Query 169330 CTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTAC 169389 ||| || | | || || ||||||| || || ||| | | ||| | | |||| ||| Sbjct 28168 CTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATAC 28227 Query 169390 ATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGC 169449 ||| || | ||||| || || ||||||| |||||| |||||||| ||||| || Sbjct 28228 CTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGC 28287 Query 169450 TCACAACTTCCCACTAGACTTAGCATCTGCTGA 169482 || |||||||| |||||| |||| ||| ||| Sbjct 28288 GCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq3977 Length=13071 Score = 82.4 bits (90), Expect = 9e-11 Identities = 59/68 (87%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 169406 AACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTA 169465 ||| | || || |||||||||||||| |||||||| ||||| |||||||||||||| ||| Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 169466 GACTTAGC 169473 ||| |||| Sbjct 75 GACCTAGC 82 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564157629431040