Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq8682 150 2e-31 seq16876 120 4e-22 seq1209 107 2e-18 seq3485 105 8e-18 seq32842 100 3e-16 seq7398 98.7 1e-15 >seq8682 Length=13014 Score = 150 bits (166), Expect = 2e-31 Identities = 184/251 (73%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 172513 ATAGTAGCAGCACACGGTTACTTTGGTCGTCTTATCTTCCAGTATGCTTCTTTCAACAAC 172572 || ||||| || || ||||| ||||| || | |||||||| ||||| |||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 172573 TCAAGAAGTCTTCACTTCTTCCTAGCAGTTTTCCCTGTTGTATGTGTATGGTTAACCTCT 172632 || | | | || ||||||||||| | || ||||| ||| || | ||||| ||| || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 172633 ATGGGTATCTGTACAATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCAGTTGTA 172692 | ||||| | || ||||| |||||| | || |||||||| ||||||||||| || || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 172693 GATGCTAACGGTAAGATTGTTCCTACATGGGGTGACGTTCTTAACAGAGCAAACCTAGGT 172752 ||| | | ||| | || ||| |||| ||| || ||||| | || || || ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 172753 ATGGAAGTTAT 172763 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 120 bits (132), Expect = 4e-22 Identities = 185/263 (70%), Gaps = 6/263 (2%) Strand=Plus/Plus Query 172547 TCTTCCAGTATGCT--TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTTTT 172604 ||||||| |||||| | |||||||||||| | | | || || |||||||| | || Sbjct 28058 TCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGCTTG 28117 Query 172605 CCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCTTAA 172664 ||||| || || ||| || || | ||||| | || ||||| |||||| | || Sbjct 28118 GCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAA 28173 Query 172665 CGGTTTCAACTTCAACCAATCAGTTGTAGATGCTAACGGTAAGATTGTTCCTACATGGGG 172724 ||| || |||||||||| || || ||| | | ||| | | ||| ||| ||| Sbjct 28174 TTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTGGCC 28233 Query 172725 TGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTTATGCATGAAAGAAATGCACACAA 172784 || || ||||| || || || |||| |||||||||||||||| | ||||| || || Sbjct 28234 AGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCAAAA 28293 Query 172785 CTTCCCATTAGACCTTGCTTCTG 172807 |||||| ||||||| ||| ||| Sbjct 28294 CTTCCCTCTAGACCTAGCTACTG 28316 >seq1209 Length=37697 Score = 107 bits (118), Expect = 2e-18 Identities = 145/199 (73%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 172486 TTCGGACAAGAAGAAGAAACATACAACATAGTAGCAGCACACGGTTACTTTGGTCGTCTT 172545 ||||| ||||| |||||||| | | || ||||| || || ||||| ||||| || | Sbjct 32511 TTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTG 32570 Query 172546 ATCTTCCAGTATGCT--TCTTTCAACAACTCAAGAAGTCTT--CACTTCTTCCTAGCAGT 172601 |||||||| |||||| | |||||||||||| | |||| || ||||||| ||| | Sbjct 32571 ATCTTCCAATATGCTAATGTTTCAACAACTC--TCATTCTTTACATTTCTTCCGAGCTGC 32628 Query 172602 TTTCCCTGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAACCT 172661 || |||| ||| || | ||||| ||| || | ||||| | || ||| | |||||| | Sbjct 32629 TTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTTTCAACTT 32688 Query 172662 TAACGGTTTCAACTTCAAC 172680 || |||| || |||||| Sbjct 32689 GAATGGTTGAAATTTCAAC 32707 >seq3485 Length=85743 Score = 105 bits (116), Expect = 8e-18 Identities = 124/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 172951 TTTGATGTTCTTGACGACTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCTGGT 173010 || ||| || | || ||||||||| ||| || |||||||| || | || ||||| ||| Sbjct 21335 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 21394 Query 173011 CTTTTACTTCTACCTTGTGCTTACCTTTCTATCGGTGGTTGGTTCTTAGGAACTACCTTC 173070 || || || | |||||||| || || | |||| |||||||| ||| || ||||| Sbjct 21395 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 21454 Query 173071 GTTACATCATGGTATACACATGGTATTGCATCTTCATATCTTGAAGGA 173118 || || ||||||||||| ||||| | ||| ||| ||| | |||||| Sbjct 21455 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGA 21502 >seq32842 Length=35535 Score = 100 bits (110), Expect = 3e-16 Identities = 121/165 (73%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 157939 GAGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGA 157998 ||||||||| |||||| || ||||| || |||||||||||||| || |||||| | Sbjct 4247 GAGAATCCTGCTTGGTATACTCAGTACACGCCATATCAAGCTGAGATTTCACAGGGACGT 4188 Query 157999 TTGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTCACAGGACTACCGATAGCA 158058 | ||| |||| | ||||| ||||| | |||||||| ||||| || || || || | Sbjct 4187 CTTGAATCTTTGCTTAATTATCAAACTTTAATCACAGATCTCACTGGTCTTCCCATGTCC 4128 Query 158059 AACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATG 158103 || || || | | ||||||| ||||| || || ||||| ||| Sbjct 4127 AATGCTTCATTGCTTGATGAAGGGACTGCTGCTGCTGAAGCTATG 4083 Score = 84.2 bits (92), Expect = 3e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 159664 CAGGTAGGTCTAGCAAAACCATGTGACTATGGTGCAGATGTATGTCATCTAAACTTACAT 159723 ||||| |||||| ||| ||| || ||| || ||||| || ||||| || | || Sbjct 270 CAGGTGGGTCTAACAAGCCCAGGTTGGATTGGGGCTGATGTTTGCCATCTCAATCTCCAC 211 Query 159724 AAGACATTCTGTATTCCACATGGAGGTGGAGGTCCTGGCGTAGGTCCTATTGGTGT 159779 || ||||| || |||||||||||||| || || |||||| | || ||||||||||| Sbjct 210 AAAACATTTTGCATTCCACATGGAGGAGGTGGCCCTGGCATGGGCCCTATTGGTGT 155 >seq7398 Length=4807 Score = 98.7 bits (108), Expect = 1e-15 Identities = 182/266 (68%), Gaps = 1/266 (0%) Strand=Plus/Plus Query 173629 GCATTTGATCCTACACAGGAAGAAGAAACTTATAGTATGATTACAGCGAACAGATTCTGG 173688 || ||| | || || || | |||||||||||| ||| | || || ||| | || ||| Sbjct 2209 GCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACTGCAAACCGCTTTTGG 2268 Query 173689 TCACAGATATTTGGTATCGCATTTTCAAACAAAAGATTTTTACACTTCCTCATGTTGTTC 173748 || | || ||||| | || ||||| || ||| | | ||||| ||| | ||||| || Sbjct 2269 TCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTT 2328 Query 173749 GTACCTGTCATGGGTATGTGGACATCATCCATAGGTATCGTAGGTCTTGCACTTAACCTT 173808 ||||| || | ||| | |||| | | || | || ||| | | ||||||| Sbjct 2329 GTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGTTTGGGCTTTAACCTA 2388 Query 173809 AGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCAGAAGATCCAGAGTTCGAGACT 173868 | || || ||||| || ||||| || || | | ||| |||||||| | || |||||| Sbjct 2389 CGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGATCCTAAATTTGAGACT 2448 Query 173869 TTCTACACTAAGAATATACTTCTTAA 173894 ||||| || || ||||| | |||||| Sbjct 2449 TTCTATACCAAAAATATTC-TCTTAA 2473 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 587755351441280