Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015285.1 Length=174285 Score E Sequences producing significant alignments: (Bits) Value seq8682 201 1e-46 seq7398 152 6e-32 seq16876 141 1e-28 seq1209 140 4e-28 seq3485 98.7 1e-15 seq14341 84.2 2e-11 >seq8682 Length=13014 Score = 201 bits (222), Expect = 1e-46 Identities = 195/251 (78%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 163078 ATCGTCGCAGCCCATGGTTACTTCGGTCGTTTGATCTTCCAATATGCATCATTCAACAAC 163137 ||||| || || |||||||| || || || |||||||||||||||||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 163138 TCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCC 163197 || ||||| || || |||||||| ||||| |||||||| || || || ||||||||||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 163198 CTTGGCGTGTCAACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTT 163257 | || | || ||||| |||||| | || |||||||| |||||||| || | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 163258 GATGGTCAGGGTCGTGTGTTGAACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGT 163317 ||| |||| |||||||| | || |||||||| || || | |||||||| | | ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 163318 ATGGAAGTTAT 163328 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq7398 Length=4807 Score = 152 bits (168), Expect = 6e-32 Identities = 206/287 (72%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 164263 GCAAACACCTTTAAGGCGTTTGATTCGACACAGGAAGAAGAGACTTATTCTATGGTCACT 164322 ||||| || || | || ||| | | || || | ||||| |||||||| ||||||||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 164323 GCAAACCGCTTCTGGTCGCAGATCTTCGGTGTTGCGTTTTCTAACAAGCGGTGGCTTCAT 164382 ||||||||||| ||||| | ||||| || ||||| ||||| || || || ||| | ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 164383 TTTTTCATGTTGTTTGTGCCTGTTATGGGTCTATGGACATCCTCTATTGGCATTATTGGC 164442 || || ||||| ||||| || || | ||| |||||| || |||| | |||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 164443 CTTGCTCTCAATCTTCGTGCTTACGATTTTGTAAGTCAAGAGATTAGAGCAGCAGAAGAT 164502 | | | || || ||||| || || || || ||| || ||| | | ||| |||||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 164503 CCTGAGTTCGAGACTTTCTATACCAAGAACATCTTATTGAACGAAGG 164549 ||| | || ||||||||||||||||| || || | || ||| |||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGG 2480 >seq16876 Length=31318 Score = 141 bits (156), Expect = 1e-28 Identities = 193/268 (72%), Gaps = 6/268 (2%) Strand=Plus/Plus Query 163102 GGTCGTTTGATCTTCCAATATGCA--TCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 163159 || || ||| ||||||||||||| | ||||||||||||||||| || || || |||| Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107 Query 163160 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCAT 163219 | ||||| |||||||| | || | |||||| || | || | || ||||| | Sbjct 28108 TAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163 Query 163220 TCAACCTGAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTGTTGA 163279 ||||| | || ||| || |||||||| | | ||||| |||| |||| ||| | Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223 Query 163280 ACACCTGGGCAGACGTTCTGAACCGTGCAGGTTTGGGTATGGAAGTTATGCACGAGCGCA 163339 | |||||| |||| || | |||| ||| | | |||| |||||||||||| || || | Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283 Query 163340 ATGCTCACAACTTCCCACTTGACCTGGC 163367 |||| || |||||||| || ||||| || Sbjct 28284 ATGCGCAAAACTTCCCTCTAGACCTAGC 28311 >seq1209 Length=37697 Score = 140 bits (154), Expect = 4e-28 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 163042 GGTTACAAGTTCGGTCAAGAAGAAGAGACATACAACATCGTCGCAGCCCATGGTTACTTC 163101 ||||| | ||||||||||| ||||| || | | ||||| || || |||||||| || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 163102 GGTCGTTTGATCTTCCAATATGC--ATCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 163159 || || ||||||||||||||||| || ||||||||||| | ||| || || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 163160 TTGCTGCATGGCCTGTTGTCGGCATCTGGTTCACCGCCCTTGGCGTGTCAACCATGGCAT 163219 ||||| ||||||| || | |||||||||||||| | || | || ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 163220 TCAACCTGAACGGTTTCAACTTCAAC 163245 ||||| |||| |||| || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq3485 Length=85743 Score = 98.7 bits (108), Expect = 1e-15 Identities = 116/157 (74%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 163631 TGGATGACTGGCTTAAGCGCGATCGTTTCGTATTTATTGGTTGGTCTGGATTACTACTTC 163690 ||||||||||| | | | || |||||||| ||| | |||||||| || || | || Sbjct 21345 TGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGTCTATTGCTCT 21404 Query 163691 TTCCCACTGCTTATATGGCAATTGGTGGCTGGCTTACTGGTACAACTTTCGTTACGTCGT 163750 |||| ||| ||| | || | || || ||| |||| |||||||| || || || || | Sbjct 21405 TTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTTGTAACTTCAT 21464 Query 163751 GGTACACCCATGGACTGGCAACTTCCTATCTTGAGGG 163787 |||| ||||||||| |||||| ||||||| | || || Sbjct 21465 GGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGG 21501 >seq14341 Length=38040 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/88 (82%), Gaps = 2/88 (2%) Strand=Plus/Minus Query 163105 CGTTTGATCTTCCAATATGCA--TCATTCAACAACTCCCGTTCCTTGCACTTCTTCCTTG 163162 || ||||||||||||||||| | ||||||||||| ||||| || || |||||||| | Sbjct 2952 CGATTGATCTTCCAATATGCTAGTGTTTCAACAACTCTCGTTCTTTACATTTCTTCCTAG 2893 Query 163163 CTGCATGGCCTGTTGTCGGCATCTGGTT 163190 |||| | |||||| || || |||||||| Sbjct 2892 CTGCTTCGCCTGTAGTAGGTATCTGGTT 2865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 557303479489600