Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015286.1 Length=175230 Score E Sequences producing significant alignments: (Bits) Value seq7398 172 6e-38 seq8682 113 5e-20 seq1209 105 7e-18 seq3485 104 3e-17 seq16876 100 3e-16 seq3977 98.7 1e-15 seq9099 89.7 6e-13 seq13547 84.2 2e-11 >seq7398 Length=4807 Score = 172 bits (190), Expect = 6e-38 Identities = 211/288 (73%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 169125 GCAAATACTTTCAAAGCATTTGACAGCACTCAGGAAGAGGAGACCTATTCAATGGTTACT 169184 |||||||| ||| | || ||| || ||||| | || || || ||||||||||| ||| Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 169185 GCAAACCGTTTCTGGTCTCAGATCTTTGGTATTGCGTTCAGTAATAAGAGGTGGTTGCAT 169244 |||||||| || ||||| | |||||||| |||| || ||||| | ||||| ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 169245 TTCTTTATGCTGTTTGTTCCTGTTATGGGTCTTTGGACAAGTTCCATCGGTATTATTGGT 169304 ||||||||| | ||||| || || | ||| | |||| ||| | | || | ||||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 169305 CTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAGATCAGAGCAGCAGAAGAT 169364 | | | ||||| ||||| |||||||| ||||| || || || | | ||| |||||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 169365 CCAGAGTTTGAGACGTTCTACACCAAGAACATCCTCTTGAACGAAGGT 169412 || | |||||||| ||||| ||||| || || ||||| ||| ||||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAACAAAGGT 2481 >seq8682 Length=13014 Score = 113 bits (124), Expect = 5e-20 Identities = 170/251 (68%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 167781 ATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCATCCTTCAACAAC 167840 ||||| |||||||||||||| || || || ||||||||||||| ||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 167841 TCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGTNNNNNNNN 167900 || || || | || |||||| | || || |||||||| || ||||| |||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 167901 NNNNNNNNNNNNNNNNNNNNATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTT 167960 |||||| | || |||||||| |||||||| ||| | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 167961 GATAGTTCTGGTAAGGTTCTGCCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGT 168020 |||||| ||| || | ||| ||||| || | | ||||||||| ||| ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 168021 ATGGAAGTTAT 168031 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq1209 Length=37697 Score = 105 bits (116), Expect = 7e-18 Identities = 132/180 (73%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 167715 GAAACCACCGAAACTGAGTCCCAGAACTATGGTTACAAGTTCGGTCAGGAAGAAGAGACG 167774 ||||||| |||| ||| || || | ||||| | |||||||| || ||||| || Sbjct 32472 GAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTCGGTCAAGAGGAAGAAACT 32531 Query 167775 TATAACATCGTCGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGC--ATCCT 167832 | | | ||||| |||||||||||||| || || || ||||||||||||| || || | Sbjct 32532 TCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAATGTT 32591 Query 167833 TCAACAACTCCCGCTCGCTGCACTTCTTCTTGGCAGCATGGCCTGTTGTTGGTATCTGGT 167892 |||||||||| | || | || |||||| || || ||||||| || ||||||||| Sbjct 32592 TCAACAACTCTCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACGTATCTGGT 32651 >seq3485 Length=85743 Score = 104 bits (114), Expect = 3e-17 Identities = 123/167 (74%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 168483 TTCGATGTCCTCGATGACTGGCTTAAACGGGATCGTTTCGTTTTTGTTGGTTGGTCTGGA 168542 |||||| | | ||||||||| | |||| |||||||||||||| |||||||| || Sbjct 21335 TTCGATATTATGGATGACTGGTTACGGAGGGACCGTTTCGTTTTTGTAGGTTGGTCCGGT 21394 Query 168543 CTTCTTCTTTTTCCCACTGCTTATCTTGCTATTGGCGGTTGGCTTACTGGGACTGCTTTC 168602 || | || ||||| ||| ||| |||| | || |||||| |||| || || | || Sbjct 21395 CTATTGCTCTTTCCTTGTGCCTATTTTGCCGTCGGAGGTTGGTTTACAGGTACAACCTTT 21454 Query 168603 GTCACGAGTTGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGG 168649 || || |||||||| || || ||||||||||||||| |||| || Sbjct 21455 GTAACTTCATGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGG 21501 >seq16876 Length=31318 Score = 100 bits (110), Expect = 3e-16 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 167922 TTCAACCTGAACGGTTTCAACTTCAACCAGTCTATCCTTGATAGTTCTGGTAAGGTTCTG 167981 |||||| | || ||| || |||||||| | | | |||||||| ||| | || | Sbjct 28163 TTCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATT 28222 Query 167982 CCTACTTGGGCAGACGTGCTCAACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGT 168041 | ||| ||| |||| | | |||| |||| ||| |||| |||||||||||| || ||| Sbjct 28223 CATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGT 28282 Query 168042 AATGCTCACAACTTCCCTCTCGACCTTGCTGCTGCTGA 168079 ||||| || ||||||||||| ||||| ||| ||| ||| Sbjct 28283 AATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq3977 Length=13071 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 168003 AACCGTGCTGGTCTGGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCTCTC 168062 ||||||||| ||| ||||||||||||||||| || ||||||||||||||||||||||| Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 168063 GACCTTGCTGCT 168074 ||||| |||||| Sbjct 75 GACCTAGCTGCT 86 >seq9099 Length=14125 Score = 89.7 bits (98), Expect = 6e-13 Identities = 129/182 (71%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 168612 TGGTATACTCACGGGTTGGCAAGTTCCTATCTGGAGGGCGCAAACTTTCTTACTGCGGCA 168671 |||||||| || || ||||||||||||||| |||| || ||||| | ||||| ||| Sbjct 789 TGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGCAACTTCTTAACTGCTGCA 730 Query 168672 GTTAGTACTCCAGCAGATTCTATGGGTCATTCTCTTCTGCTTCTCTGGGGTCCTGAGGCA 168731 || ||||| || || | | | || ||| | || | | ||||||| ||| ||| Sbjct 729 ATTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTATTATGGGGTCTTGAAGCA 670 Query 168732 CAAGGGGATTTCGTCAGATGGTGTCAACTTGGAGGACTCTGGGCTTTTGTGGCGCTCCAC 168791 |||| ||||| | ||||||||| | || || || ||| |||||| || |||||| Sbjct 669 TAAGGAGATTTTACTTGTTGGTGTCAATTAGGTGGTCTGTGGATTTTTGTTGCTCTCCAC 610 Query 168792 GG 168793 || Sbjct 609 GG 608 >seq13547 Length=78248 Score = 84.2 bits (92), Expect = 2e-11 Identities = 185/273 (68%), Gaps = 7/273 (3%) Strand=Plus/Minus Query 167103 ACCAGCACTAACAACCGTCTGTATGTCGGTTGGTTCGGCGTTCTGATGATCCCTACGTTG 167162 |||| |||||| |||| ||| || | || ||||| || ||| | || |||||||| || Sbjct 5599 ACCAACACTAA-AACCATCTCTACATTGGATGGTTTGGTGTTTTAATAATCCCTACCTTA 5541 Query 167163 CTTGCAGCAACCATCTGT--TTCATCATCGCCTTCGTCGGTGCTCCTCCTGTGGACATCG 167220 | || ||||| ||||| || | || |||||| | | ||| || || || || | Sbjct 5540 TTAGCTGCAACT-TCTGTATTTATTAATTGCCTTCATTACTACTCATCTAGTAGATATTG 5482 Query 167221 ATGGTATCCGCGAACCAGTTGCTGGTTCACTCATGTATGGTAACAACATCATCTCTGGTG 167280 |||||| | | ||| |||| | || | ||||| ||||| || || ||| ||| Sbjct 5481 GTGGTATTTGTAGATATGTTTCTGGAACTCTAGTTTATGGAAACAATATTATTTCTAGTG 5422 Query 167281 CAGTTGTTCCTTCTTCTAATGCTATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCAA 167340 | | ||||| ||||| ||||| ||| | ||||| ||||| || || ||| | Sbjct 5421 CTAATATTCCTGTTTCTACAGCTATCGGTTTGCACTTTTATCCAATTTGAAAAGTTGT-- 5364 Query 167341 CCCTCGACGAGTGGTTGTACAATGGTGGTCCTT 167373 | | | | || || |||||||||||||||| Sbjct 5363 -CGTTAATAAATGATTATACAATGGTGGTCCTT 5332 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560325958115200