Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq8682 123 4e-23 seq1209 98.7 1e-15 >seq8682 Length=13014 Score = 123 bits (136), Expect = 4e-23 Identities = 178/251 (71%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 215987 ATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAAC 216046 ||||||||||| || ||||| ||||| || | ||||||||||| ||| |||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 216047 TCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCA 216106 || | | | || |||||||| || || | ||||| | |||| ||| || || Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 216107 ATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTA 216166 | ||| | |||||||| |||||| | || |||||||| |||||||| ||||| || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 216167 GACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGT 216226 || ||| || ||| ||| ||||| || || ||||| | || |||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 216227 ATGGAAGTAAT 216237 |||||||| || Sbjct 6200 ATGGAAGTTAT 6210 >seq1209 Length=37697 Score = 98.7 bits (108), Expect = 1e-15 Identities = 170/244 (70%), Gaps = 6/244 (2%) Strand=Plus/Plus Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || | || | |||||| || | ||||| | ||||| |||||||| Sbjct 32466 ATCAGGGAAACCATAGAAAATGAATCTGCTAATTTAGGTTATAGATTCGGTCAAGAGGAA 32525 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGC- 216033 ||||| | | ||||||||||| || ||||| ||||| || | ||||||||||| || Sbjct 32526 GAAACTTCTCATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCT 32585 Query 216034 -ATCTTTCAACAACTCAAGAAGTCTT--CACTTCTTCCTTGCAGCATTCCCTGTTATTTG 216090 || |||||||||||| | |||| || ||||||| || || | |||| | | Sbjct 32586 AATGTTTCAACAACTC--TCATTCTTTACATTTCTTCCGAGCTGCTTGGCCTGAAGTACG 32643 Query 216091 TATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTT 216150 ||||||| || || | ||| | |||||| | |||||| | || |||| || || Sbjct 32644 TATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTTTCAACTTGAATGGTTGAAATTT 32703 Query 216151 CAAC 216154 |||| Sbjct 32704 CAAC 32707 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744706749447040