Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015288.1 Length=191195 Score E Sequences producing significant alignments: (Bits) Value seq8682 214 2e-50 seq16876 172 7e-38 seq7398 161 1e-34 seq1209 140 4e-28 seq3977 95.1 1e-14 seq9099 84.2 3e-11 >seq8682 Length=13014 Score = 214 bits (236), Expect = 2e-50 Identities = 198/251 (79%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 182487 ATCGTTGCAGCCCATGGCTACTTCGGTCGTTTGATCTTCCAATACGCATCATTCAACAAC 182546 ||||| || || ||||| || || || || |||||||||||||| ||| ||||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 182547 TCCCGTTCCTTGCACTTCTTCCTTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCA 182606 || ||||| || || |||||||| ||||| |||||||| || || || ||||||||||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 182607 CTTGGTGTCTCCACGATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTT 182666 | ||| | ||| ||||| |||||| | || |||||||| |||||||| || | || Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 182667 GATGGTCAGGGTCGTGTCCTTAACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGT 182726 ||| |||| |||||||| |||| || ||||| ||| | | ||||||||| ||||||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 182727 ATGGAAGTTAT 182737 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq16876 Length=31318 Score = 172 bits (190), Expect = 7e-38 Identities = 205/277 (74%), Gaps = 6/277 (2%) Strand=Plus/Plus Query 182511 GGTCGTTTGATCTTCCAATACGCA--TCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 182568 || || ||| |||||||||| || | ||||||||||||||||| || || || |||| Sbjct 28048 GGCCGATTGGTCTTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCC 28107 Query 182569 TTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCAT 182628 | ||||| |||||||| | || | |||||| || | ||| | ||| ||||| | Sbjct 28108 TAGCTGCTTGGCCTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTT 28163 Query 182629 TCAACCTCAACGGTTTCAACTTCAACCAGTCCATCCTTGATGGTCAGGGTCGTGTCCTTA 182688 ||||| | || ||| || |||||||| | | ||||| |||| |||| ||| || Sbjct 28164 TCAACTTAAATTGTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTC 28223 Query 182689 ACACTTGGGCAGATGTATTGAACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTA 182748 | || ||| ||||| | | |||| |||| |||||||| ||||||||||||||| |||| Sbjct 28224 ATACCTGGCCAGATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTA 28283 Query 182749 ACGCACACAACTTCCCACTAGATCTTGCTGCTGCTGA 182785 | || || |||||||| ||||| || ||| ||| ||| Sbjct 28284 ATGCGCAAAACTTCCCTCTAGACCTAGCTACTGTTGA 28320 >seq7398 Length=4807 Score = 161 bits (178), Expect = 1e-34 Identities = 205/281 (73%), Gaps = 1/281 (0%) Strand=Plus/Plus Query 183823 GCAAACACATTCAAGGCATTTGATTCCACTCAAGAAGAAGAGACGTATTCTATGGTTACA 183882 ||||| |||||| | || ||| | | ||||||| ||||| || ||||| ||||| || Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 183883 GCGAATCGTTTCTGGTCACAAATCTTCGGGGTTGCGTTTAGCAATAAGCGTTGGTTGCAC 183942 || || || || ||||| ||||||| |||||||| ||| |||||| |||||||| || Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 183943 TTCTTTATGTTGTTTGTTCCTGTCATGGGTCTTTGGGTCTCTTCTATTGGCATCATTGGG 184002 ||||||||||| ||||| || || | ||| | ||| | | || |||| | |||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 184003 CTTGCTCTTAATCTTCGTGCTTATGATTTTGTAAGTCAAGAGATCAGAGCAGCAGAAGAT 184062 | | |||| || ||||| ||||| || || ||| || || | | ||| |||||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 184063 CCAGAATTTGAGACGTTCTACACAAAGAACATACTTCTTAA 184103 || |||||||||| ||||| || || || || | |||||| Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTC-TCTTAA 2473 >seq1209 Length=37697 Score = 140 bits (154), Expect = 4e-28 Identities = 155/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 182451 GGTTACAAGTTCGGTCAAGAAGAAGAGACCTATAACATCGTTGCAGCCCATGGCTACTTC 182510 ||||| | ||||||||||| ||||| || | | | ||||| || || ||||| || || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 182511 GGTCGTTTGATCTTCCAATACGC--ATCATTCAACAACTCCCGTTCCTTGCACTTCTTCC 182568 || || |||||||||||||| || || ||||||||||| | ||| || || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 182569 TTGCTGCATGGCCTGTTGTTGGAATCTGGTTCACCGCACTTGGTGTCTCCACGATGGCAT 182628 ||||| ||||||| || | |||||||||||||| | ||| | ||| ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 182629 TCAACCTCAACGGTTTCAACTTCAAC 182654 ||||| | || |||| || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq3977 Length=13071 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 182709 AACCGTGCTGGTCTTGGTATGGAAGTTATGCATGAGCGTAACGCACACAACTTCCCACTA 182768 ||||||||| |||||||||||||||||||||||| ||||| || ||||||||||| ||| Sbjct 15 AACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTA 74 Query 182769 GATCTTGCTGCT 182780 || || |||||| Sbjct 75 GACCTAGCTGCT 86 >seq9099 Length=14125 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 183310 TGGTATACCCATGGACTTGCTTCTTCCTATCTTGAAGG-TGCTAACTTTCTTACGGCAGC 183368 ||||||||||||||| | || ||||||| | ||||| ||| ||||| | || || || Sbjct 789 TGGTATACCCATGGATTGGCAAGTTCCTATTTGGAAGGATGC-AACTTCTTAACTGCTGC 731 Query 183369 TGTCTCGACGCCTGCTGACGCTATGGGTCATTCTCTTCTGTTACTTTGGGGTCCTGAGTC 183428 | ||||| |||||| | | | | || ||| | ||||| | ||||||| ||| | Sbjct 730 AATTTCGACTCCTGCTAATAGTTTAGCCCACTCTTTGTTGTTATTATGGGGTCTTGAAGC 671 Query 183429 TCAAGGGGACTTTCAACGCTGGTGCCAACTTGGGGGACTCTGGAATTTTGTGGCACTCCA 183488 |||| || ||| | ||||| ||| | || || || |||| |||||| || ||||| Sbjct 670 ATAAGGAGATTTTACTTGTTGGTGTCAATTAGGTGGTCTGTGGATTTTTGTTGCTCTCCA 611 Query 183489 CGG 183491 ||| Sbjct 610 CGG 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611388255742400