Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Citrullus_20lanatus_20[genbank_20GCA_5F000238415.1_202011-12-13] 40,248 sequences; 321,046,825 total letters Query= NC_015289.1 Length=176184 Score E Sequences producing significant alignments: (Bits) Value seq8682 187 3e-42 seq7398 183 3e-41 seq16876 161 1e-34 seq1209 134 2e-26 seq3977 96.9 4e-15 seq14314 95.1 1e-14 seq22494 91.5 2e-13 seq13547 87.8 2e-12 seq3976 87.8 2e-12 seq3573 87.8 2e-12 >seq8682 Length=13014 Score = 187 bits (206), Expect = 3e-42 Identities = 192/251 (76%), Gaps = 0/251 (0%) Strand=Plus/Plus Query 165457 ATCGTCGCTGCCCACGGGTACTTCGGTCGTCTCATTTTCCAATACGCATCCTTCAACAAT 165516 ||||| ||||| || || || || || || | || |||||||| ||| |||||||| Sbjct 5960 ATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAC 6019 Query 165517 TCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCT 165576 || ||||| | || |||||||| || || ||||||||||| ||||| |||||||| ||| Sbjct 6020 TCTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTCACCGCT 6079 Query 165577 CTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAACCAGTCTATTGTT 165636 | ||| ||||||| ||||| |||||| | || |||||||| |||||||| ||| | ||| Sbjct 6080 TTAGGTATTAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCTGTAGTT 6139 Query 165637 GATAGTCAGAACAAAATCATCCCTACTTGGGCTGACGTTCTGAACCGTGCTGGTCTGGGT 165696 |||||||| | || ||| |||||||| || | ||||||||| ||| ||| Sbjct 6140 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGTGCTAATCTTGGT 6199 Query 165697 ATGGAAGTTAT 165707 ||||||||||| Sbjct 6200 ATGGAAGTTAT 6210 >seq7398 Length=4807 Score = 183 bits (202), Expect = 3e-41 Identities = 209/281 (74%), Gaps = 0/281 (0%) Strand=Plus/Plus Query 166803 GCAAATACTTTCAAGGCATTCGACTCTACTCAAGAGGAAGAAACCTATTCAATGGTTACA 166862 |||||||| ||| | || || || | ||||||| |||||||| ||||||||||| || Sbjct 2194 GCAAATACATTCCATGCTTTTAACCCAACTCAAGCTGAAGAAACTTATTCAATGGTCACT 2253 Query 166863 GCAAACCGCTATTGGTCTCAGATCTTCGGTATTGCGTTTAGTAATAAGAGGTGGTTGCAT 166922 |||||||||| |||||| | ||||| || |||| ||| ||||| | ||||| ||| Sbjct 2254 GCAAACCGCTTTTGGTCCGAAATCTTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACAT 2313 Query 166923 TTCTTTATGCTGTTTGTTCCTGTTATGGGTCTGTGGACAAGTTCCATCGGTATTATTGGT 166982 ||||||||| | ||||| || || | ||| | |||| ||| | | || | ||||| Sbjct 2314 TTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTTGGT 2373 Query 166983 CTTGCTCTCAACCTTCGTGCTTATGACTTTGTTTCCCAAGAACTAAGGGCAGCAGAGGAT 167042 | | | ||||| ||||| |||||||| ||||| || ||| | | | ||| || ||| Sbjct 2374 TTGGGCTTTAACCTACGTGCCTATGACTTCGTTTCTCAGGAAATTCGTGTAGCGGAAGAT 2433 Query 167043 CCTGAGTTTGAAACCTTCTATACCAAGAACATTCTCTTGAA 167083 ||| | ||||| || ||||||||||| || |||||||| || Sbjct 2434 CCTAAATTTGAGACTTTCTATACCAAAAATATTCTCTTAAA 2474 >seq16876 Length=31318 Score = 161 bits (178), Expect = 1e-34 Identities = 193/261 (74%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 165493 TTCCAATACGCA--TCCTTCAACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGC 165550 |||||||| || | |||||||| |||||||| | || || ||||| || || |||| Sbjct 28060 TTCCAATATGCTAGTGTTTCAACAACTCCCGTTCTTTACATTTATTCCTAGCTGCTTGGC 28119 Query 165551 CTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACG 165610 ||||| | |||| |||||| ||| | ||| ||||||| ||||| |||||| | || Sbjct 28120 CTGTAATAGGTA----GTTCACAGCTTTAGGTATTAGCACTATGGCTTTCAACTTAAATT 28175 Query 165611 GTTTCAACTTCAACCAGTCTATTGTTGATAGTCAGAACAAAATCATCCCTACTTGGGCTG 165670 ||| || |||||||| | | | ||||||||||| | | || | ||| ||| | | Sbjct 28176 GTTGAAATTTCAACCAATTTGTAGTTGATAGTCAAGGTCATGTAATTCATACCTGGCCAG 28235 Query 165671 ACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTCACAACT 165730 | || | |||| |||| ||| |||| ||||||||||||||| ||||| || || |||| Sbjct 28236 ATATTATTAACCATGCTAATCTTGGTAGGGAAGTTATGCATGAACGTAATGCGCAAAACT 28295 Query 165731 TCCCCCTCGACCTCGCTGCTG 165751 |||| || ||||| ||| ||| Sbjct 28296 TCCCTCTAGACCTAGCTACTG 28316 >seq1209 Length=37697 Score = 134 bits (148), Expect = 2e-26 Identities = 154/206 (75%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 165421 GGTTATAAGTTTGGACAAGAAGAAGAGACCTATAACATCGTCGCTGCCCACGGGTACTTC 165480 ||||||| || || ||||| ||||| || | | | ||||| ||||| || || || || Sbjct 32502 GGTTATAGATTCGGTCAAGAGGAAGAAACTTCTCATATCGTAGCTGCTCATGGTTATTTT 32561 Query 165481 GGTCGTCTCATTTTCCAATACGC--ATCCTTCAACAATTCCCGTTCGCTGCACTTCTTCC 165538 || || | || |||||||| || || |||||||| || | ||| | || ||||||| Sbjct 32562 GGCCGATTGATCTTCCAATATGCTAATGTTTCAACAACTCTCATTCTTTACATTTCTTCC 32621 Query 165539 TCGCAGCATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCAT 165598 || || ||||||| ||| ||||||||||||| ||| | ||| ||||||| ||| | | Sbjct 32622 GAGCTGCTTGGCCTGAAGTACGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGACTT 32681 Query 165599 TCAACCTGAACGGTTTCAACTTCAAC 165624 ||||| |||| |||| || |||||| Sbjct 32682 TCAACTTGAATGGTTGAAATTTCAAC 32707 >seq3977 Length=13071 Score = 96.9 bits (106), Expect = 4e-15 Identities = 73/86 (85%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 165665 GGGCTGACGTTCTGAACCGTGCTGGTCTGGGTATGGAAGTTATGCATGAGCGTAACGCTC 165724 || |||| || | ||||||||| ||| |||||||||||||||||||| ||||| |||| Sbjct 1 GGTCTGATATTATAAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTC 60 Query 165725 ACAACTTCCCCCTCGACCTCGCTGCT 165750 |||||||||| || ||||| |||||| Sbjct 61 ACAACTTCCCTCTAGACCTAGCTGCT 86 >seq14314 Length=96451 Score = 95.1 bits (104), Expect = 1e-14 Identities = 81/99 (82%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 165546 ATGGCCTGTAGTTGGTATCTGGTTCACTGCTCTTGGTGTTAGCACCATGGCATTCAACCT 165605 |||||||||||| |||||||||||||| ||| | ||| ||||||| ||| | ||||| || Sbjct 62564 ATGGCCTGTAGTAGGTATCTGGTTCACCGCTTTAGGTATTAGCACTATGTCTTTCAA-CT 62622 Query 165606 GAACGGTTTCAACTTCAACCAGTCTATTGTTGATAGTCA 165644 || ||| || |||||||| ||| | ||||||||||| Sbjct 62623 TAAATGTTAAAATTTCAACCAATCTGTAGTTGATAGTCA 62661 >seq22494 Length=12707 Score = 91.5 bits (100), Expect = 2e-13 Identities = 76/93 (82%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 165511 AACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTC 165570 ||| ||| ||||| | || |||||||| || || ||||||||||| |||||||||||| Sbjct 7464 AACTATTTTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 7523 Query 165571 ACTGCTCTTGGTGTTAGCACCATGGCATTCAAC 165603 || ||| | ||| ||||||| ||||| |||||| Sbjct 7524 ACCGCTTTAGGTATTAGCACTATGGCTTTCAAC 7556 >seq13547 Length=78248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 216/323 (67%), Gaps = 6/323 (2%) Strand=Plus/Minus Query 164791 AACCGTCTTTATGTCGGTTGGTTCGGTGTTCTTATGATCCCCTGTTTGCTCGCCGCTACA 164850 |||| ||| || | || ||||| |||||| | || ||||| || | || || || Sbjct 5588 AACCATCTCTACATTGGATGGTTTGGTGTTTTAATAATCCCTACCTTATTAGCTGCAACT 5529 Query 164851 ATTTGT-TTTATTACT-GCATTCATCGCTGCTCCCCCTGTGGACATTGATGGTATTCGTG 164908 | ||| ||||||| | || ||||| || ||| | || || |||| ||||||| || Sbjct 5528 -TCTGTATTTATTAATTGCCTTCATTACTACTCATCTAGTAGATATTGGTGGTATTTGTA 5470 Query 164909 AACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGTTCCGT 164968 | ||| | || ||||| | || || ||||| || || ||| ||||| |||| Sbjct 5469 GATATGTTTCTGGAACTCTAGTTTATGGAAACAATATTATTTCTAGTGCTAATATTCCTG 5410 Query 164969 CTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGATGAAT 165028 ||||| || ||||| | ||||| ||||| ||||| ||| || | | || ||| Sbjct 5409 TTTCTACAGCTATCGGTTTGCACTTTTATCCAATTTGAAAAGTTGT---CGTTAATAAAT 5353 Query 165029 GGTTGTACAACGGTGGTCCTTACCAGTTGGTTGTCTTCCACTTCCTCATCGGTGTAGCTT 165088 | || ||||| ||||||||||| || | || | | | || | | |||||| | | Sbjct 5352 GATTATACAATGGTGGTCCTTATGAGCTAATTATTCTAAAGTTTTTACTTGGTGTAACAT 5293 Query 165089 GCTACATGGGTCGTGAGTGGGAA 165111 | |||| || || |||||| || Sbjct 5292 GTTACACGGATCAAGAGTGGAAA 5270 >seq3976 Length=23881 Score = 87.8 bits (96), Expect = 2e-12 Identities = 87/113 (77%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 165511 AACAATTCCCGTTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTAGTTGGTATCTGGTTC 165570 ||| ||| ||||| | || |||||||| || || |||| |||| | |||||||||||| Sbjct 23769 AACTATTTTCGTTCTTTACATTTCTTCCTAGCTGCTTGGCTTGTAATAGGTATCTGGTTC 23828 Query 165571 ACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTGAACGGTTTCAACTTCAA 165623 || ||| | ||| ||||||| ||||| ||||| | || |||| || ||||| Sbjct 23829 ACCGCTTTAGGTATTAGCACTATGGCTTTCAAATTAAATGGTTGAAATTTCAA 23881 >seq3573 Length=19979 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/145 (74%), Gaps = 1/145 (1%) Strand=Plus/Minus Query 164904 TCGTGAACCTGTCGCAGGTTCTCTAATGTACGGTAACAACATCATCTCTGGTGCTGTCGT 164963 ||||||||||| | || |||||| | ||| | ||||| || || ||| |||| | | Sbjct 1079 TCGTGAACCTGGTTCTGGATCTCTACTTTACTGAAACAATATTATTTCTAGTGCCATTAT 1020 Query 164964 TCCGTCTTCTAACGCAATCGGACTTCACTTCTATCCTATTTGGGAAGCTGCAACCATGGA 165023 || ||||| || || || | ||||| ||||| |||||||||||||| || | || Sbjct 1019 CCCTACTTCTCCAGCTATTGGGTTGCACTTTTATCCAATTTGGGAAGCTGCCTCCTTTGA 960 Query 165024 TGAATGGTTGTACAA-CGGTGGTCC 165047 |||||| |||||||| ||| |||| Sbjct 959 TGAATGATTGTACAATTGGTTGTCC 935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 563377222251520